Rmu_sc0002776.1_g000004

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002776.1
OG0000698
Physical Location & Seq
Reverse (-)
16489 .. 16752
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002776.1_g000004.1.cds

Sequence Viewer

Length: 264 bp
atgccgcatactcttgggcctatggaccgttttgcaacccccatcgatccggattcttcattggatggaagtaggaagatgaggcaacaaaatatcaatgatgcacttttcaagcaaagaacacatagtgtgcatcaatacttggctagatgggtgtatgaagccgggattccttttcatgccgttgatagtgatagcttcaagaggttgaagcggttggtcaatttggcccgggttaccgacctccaagccaatatcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

87

Amino Acids

10.02

Weight (kDa)

9.69

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 2 cut(s) 5, 214
AclWI GGATC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 112, 202, 211
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 231
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 2 cut(s) 17, 228
AspS9I GGNCC 3 cut(s) 17, 25, 229
AsuC2I CCSGG 3 cut(s) 166, 232, 233
AvaI CYCGRG 1 cut(s) 231
AvaII GGWCC 1 cut(s) 25
BccI CCATC 3 cut(s) 50, 59, 144
BceAI ACGGC 1 cut(s) 167
BcnI CCSGG 3 cut(s) 166, 232, 233
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 3 cut(s) 166, 232, 233
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 3 cut(s) 17, 25, 229
BmrFI CCNGG 3 cut(s) 166, 232, 233
BmsI GCATC 2 cut(s) 91, 142
BpuMI CCSGG 3 cut(s) 166, 232, 233
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 70
BshFI GGCC 2 cut(s) 19, 230
BshVI ATCGAT 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 3 cut(s) 50, 165, 232
BsnI GGCC 2 cut(s) 19, 230
BsoBI CYCGRG 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 5, 214
BspANI GGCC 2 cut(s) 19, 230
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 3 cut(s) 164, 230, 231
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 2 cut(s) 19, 230
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 70
Cfr13I GGNCC 3 cut(s) 17, 25, 229
Cfr9I CCCGGG 1 cut(s) 231
ClaI ATCGAT 1 cut(s) 45
CviAII CATG 1 cut(s) 179
CviJI RGCY 6 cut(s) 19, 146, 164, 198, 230, 251
CviKI_1 RGCY 6 cut(s) 19, 146, 164, 198, 230, 251
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
FaeI CATG 1 cut(s) 182
FaiI YATR 5 cut(s) 9, 23, 126, 159, 180
FatI CATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 5
HaeIII GGCC 2 cut(s) 19, 230
HapII CCGG 3 cut(s) 50, 165, 232
Hin1II CATG 1 cut(s) 182
HinfI GANTC 2 cut(s) 53, 169
HpaII CCGG 3 cut(s) 50, 165, 232
Hpy188III TCNNGA 2 cut(s) 50, 202
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 35, 104, 133
Hsp92II CATG 1 cut(s) 182
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 63, 178, 245
LweI GCATC 2 cut(s) 91, 142
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 48, 88
MluCI AATT 2 cut(s) 223, 259
MnlI CCTC 3 cut(s) 75, 198, 254
MroI TCCGGA 1 cut(s) 49
MseI TTAA 1 cut(s) 262
MspI CCGG 3 cut(s) 50, 165, 232
MspR9I CCNGG 3 cut(s) 166, 232, 233
NciI CCSGG 3 cut(s) 166, 232, 233
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 182
PfeI GAWTC 2 cut(s) 53, 169
PkrI GCNGC 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 17, 25, 229
SaqAI TTAA 1 cut(s) 262
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 17, 25, 229
ScrFI CCNGG 3 cut(s) 166, 232, 233
SetI ASST 3 cut(s) 200, 209, 246
SfaNI GCATC 2 cut(s) 91, 142
SinI GGWCC 1 cut(s) 25
SmaI CCCGGG 1 cut(s) 233
Sse9I AATT 2 cut(s) 223, 259
SsiI CCGC 2 cut(s) 5, 214
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 164, 230, 231
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 223, 259
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 53, 169
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 48, 167, 174
TspMI CCCGGG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 25
XmaI CCCGGG 1 cut(s) 231
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.