Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001017.1

Orthogroup ID

OG0000698

Physical Location & Seq

Genomic Coordinates Forward (+)

124475 .. 124831

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001017.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggcatcttccggaggatctaatgctactaatgaagtggatagatcattgaggcgtggatcaacctatgttggatgggactttgcggtattggcggatccacacaacttagacaagttgaagtgtaagttgtgtgggaaagtggttagtggtggaatacatcgaatgaagcaacacattgccaacattaagggaaatgttgcctcatgcaagaattctacggatgccaataaagccaaatgtatagccgcaatagaaggagcaaaatttaagagaaagcaaaaggatatgcataagaaggaagtgagggaagaagttgaagttactcattcccatgatgtagaaagccaacattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009637 GO:0009785 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0030522 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0104004 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04922 map04010 map04922

Pfam Domains

Protein Families

Metallophos PMD

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

9.39

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43260 AT5G31412
fragaria_vesca	FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica	MD07G1147000.v1.1
prunus_persica	Prupe.4G255800_v2.0.a1
pyrus_communis	pycom09g15950 pycom10g13140
rosa_chinensis	RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora	Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii	Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa	Rorug05G0244000
rosa_samantha	Rh3DG075100
rosa_wichuraiana	Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	11
AciI	CCGC	3 cut(s)	86, 95, 249
AclWI	GGATC	4 cut(s)	25, 67, 92, 105
AcsI	RAATTY	2 cut(s)	214, 266
AgsI	TTSAA	2 cut(s)	121, 320
AlwI	GGATC	4 cut(s)	25, 67, 92, 105
Aor13HI	TCCGGA	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	214, 266
BamHI	GGATCC	1 cut(s)	97
BccI	CCATC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	14, 214
BsaWI	WCCGGW	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	11
BseGI	GGATG	2 cut(s)	80, 229
BseMI	GCAATG	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	17, 44, 59, 97
BspACI	CCGC	3 cut(s)	86, 95, 249
BspEI	TCCGGA	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	4 cut(s)	25, 67, 92, 105
BsrDI	GCAATG	1 cut(s)	177
BssMI	GATC	4 cut(s)	17, 44, 59, 97
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	80, 229
BstKTI	GATC	4 cut(s)	20, 47, 62, 100
BstMBI	GATC	4 cut(s)	17, 44, 59, 97
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 233
BstX2I	RGATCY	2 cut(s)	17, 97
BstYI	RGATCY	2 cut(s)	17, 97
BtsCI	GGATG	2 cut(s)	80, 229
CviAII	CATG	2 cut(s)	207, 335
CviJI	RGCY	3 cut(s)	236, 248, 348
CviKI_1	RGCY	3 cut(s)	236, 248, 348
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	4 cut(s)	19, 46, 61, 99
DpnII	GATC	4 cut(s)	17, 44, 59, 97
EciI	GGCGGA	1 cut(s)	110
EcoRI	GAATTC	1 cut(s)	214
EcoT22I	ATGCAT	1 cut(s)	294
FaeI	CATG	2 cut(s)	210, 338
FaiI	YATR	6 cut(s)	69, 208, 245, 290, 294, 336
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	206, 334
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	87, 236
Fsp4HI	GCNGC	1 cut(s)	249
GluI	GCNGC	1 cut(s)	249
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	210, 338
HpaII	CCGG	1 cut(s)	12
Hpy188III	TCNNGA	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	251, 292
HpyCH4V	TGCA	2 cut(s)	210, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 233
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	210, 338
Kpn2I	TCCGGA	1 cut(s)	11
Kzo9I	GATC	4 cut(s)	17, 44, 59, 97
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	1 cut(s)	25
LweI	GCATC	2 cut(s)	14, 214
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	19, 46, 61, 99
MboI	GATC	4 cut(s)	17, 44, 59, 97
MboII	GAAGA	1 cut(s)	323
MflI	RGATCY	2 cut(s)	17, 97
MluCI	AATT	2 cut(s)	214, 266
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	8, 45, 214, 300
Mph1103I	ATGCAT	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	11
MseI	TTAA	3 cut(s)	189, 270, 355
MslI	CAYNNNNRTG	1 cut(s)	333
MspI	CCGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	92, 233
NdeII	GATC	4 cut(s)	17, 44, 59, 97
NlaIII	CATG	2 cut(s)	210, 338
NlaIV	GGNNCC	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	17, 97
RseI	CAYNNNNRTG	1 cut(s)	333
SaqAI	TTAA	3 cut(s)	189, 270, 355
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	4 cut(s)	17, 44, 59, 97
SetI	ASST	1 cut(s)	68
SfaNI	GCATC	2 cut(s)	14, 214
SgeI	CNNG	6 cut(s)	24, 68, 127, 219, 223, 347
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	214, 266
SsiI	CCGC	3 cut(s)	86, 95, 249
TaqI	TCGA	1 cut(s)	163
TasI	AATT	2 cut(s)	214, 266
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	189, 270, 355
Tru9I	TTAA	3 cut(s)	189, 270, 355
TspDTI	ATGAA	2 cut(s)	48, 182
TspGWI	ACGGA	1 cut(s)	236
XapI	RAATTY	2 cut(s)	214, 266
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.