Rw2G035670

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
58711197 .. 58715351
4155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035670.1

Sequence Viewer

Length: 1740 bp
ATGGCGGGTACTACATCTTCCTCGGCATCTAATGCAATGTCGGAGATGGGTTCATCATTGAAGCGTGGTTCAGGTGATATTGGATGGGAATATGCGGAGTTGGCGGATGCTTCAAACTTGGATAGGTTGAAGTGTAAGTTGTGTGGGAAATTAGTGAGTGGTGGGATATATCGAATAAAACAACATATTGCCCACATCAAGGGAAATGTGGCTGCTTGTAAAAAGTCTTCGGATGAGGATAAAGCCAAATGCAAGAATGCTATTGAAGAGGCAAAGTCTAAGAAGAAACAAAAGAGTAGACATGAAGCAGAAATTAGGCAAGAAGTCATTATTGAAGGAGATGAAGACAATGAAGCGAGTCAAGGGACAAGAAGAATGCCGCATACTCTTGGGCCTATGGACCGTTTTGCATCCCCCATCGATCCGGATTCTTCATTGGATGGAAGTAGGAAGATGAGGCAACAAAATATCAATGATGCACTTTTCAAGCAAAGAACACATAGTGTGCATCAATACTTGGCTAGATGGGTGTATGAAGCCGGGATTCCTTTTCATGCTATTGATAGTGATAGCTTCAAGAGGTTTGTCGAAGCGGTTGGTCAATTTGGCCCGGGTTACCGACCTCCAAGCCAATATCAATTAAGGGAGCCACTATTGAAGGAAGAGGTAGATAGAACTAAAAGCACAACTTTTCTCTCTTCTAAGGGAGCATCGGATGAGGCACACACAGGGACATATATTTTTGAATATGTGGACAAGTGCATTGAAGAAATTGGGCCACAAAATGTGGTTCAAGTGGTGACGGACAATGCTTCAAATAATATGGCGGCGGGAAATTTGATGAAGTTGAAGAGGCCAAACATATTTTGGACTTCATGTGCAACTCACACCTTCAATCTTATGCTTCAAGGAATTGGCAACCAACCTAGATTCAAAGGGGTCATTGAGAAGGCAAAGAGCTTCACCATCTATATTTATGCACATCACAAGACTTTGGCATTGATGAGGAAGTTTACAAAGAAAAGAGATATAGTGAGGCCGGGAGTCACTAGATTTGCAACCGCCTTCCTTACTTTGCAAAGCTTGATGGAGAAGAAGAATGAGTTGAGAGCTATGATCACTAGTGATGAATGGAATGCAAGCGCAAAGAGTGTAAAGGGGAAGACGGCGGTGAATATTGTTTTGAGTGCTTCTTTTTGGAATGGGGTAAGTCTTTGCTTGAAGGTGTTTGCCCCTTTAGTCAAGGTGCTTCGCCTTGTTGATGGGGATAGAAAGCCATCAATGGGCTTTGTGTACGGAGAACTACTTAGAGCCAAAGAGGAGATTAAAATGGCATTCAAAGATCAAGAAGCTCACTATCGTCCAATCCTTGACATTGTTGATGGAAAAGCCCGTGATCGGCTTGATAGTCCATTGCATTTAGCGGGTTACCTCTTGAACCCTTACTACACATATGCCAATTCAAGCATTGAGAATGATAATGTAGTCATGGATGAGTTCTTCACTTGTGTTGAGGTATTCTTTCCCGATGACATTCAAACTCAAAGTTTGGTGACAAATGTAGAATTGCACAAGTATTTGAAGAAAGAGGGTGGATTTGGAAGAAGTTTGGCTAAGGCGGGATGCGCACAAAATGATGACAATTATAATCCGGCAGAGGAGGTATCCTTGGTTATGGTTCTGATGTCTTCCATCCCAATACTCACTCTCATATACCAGCATGGTCTTTGTGTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

579

Amino Acids

64.8

Weight (kDa)

8.81

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 228 - 320 8.7e-32 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1647
Acc16I TGCGCA 1 cut(s) 1627
AccI GTMKAC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 424
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 835
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 2 cut(s) 10, 1295
AfiI CCNNNNNNNGG 3 cut(s) 199, 1283, 1398
AhlI ACTAGT 1 cut(s) 1121
AluBI AGCT 5 cut(s) 573, 960, 1083, 1112, 1352
AluI AGCT 5 cut(s) 573, 960, 1083, 1112, 1352
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 610
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 5 cut(s) 392, 607, 776, 854, 1037
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 835
AspLEI GCGC 2 cut(s) 1145, 1628
AspS9I GGNCC 4 cut(s) 392, 400, 608, 776
AsuC2I CCSGG 4 cut(s) 541, 611, 612, 1041
AsuHPI GGTGA 5 cut(s) 86, 811, 955, 1183, 1564
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 1 cut(s) 400
BarI GAAGNNNNNNTAC 3 cut(s) 33, 211, 243
BbsI GAAGAC 4 cut(s) 219, 351, 1169, 1680
BbvI GCAGC 1 cut(s) 199
BceAI ACGGC 1 cut(s) 1182
BciVI GTATCC 1 cut(s) 1675
BclI TGATCA 1 cut(s) 1116
BcnI CCSGG 4 cut(s) 541, 611, 612, 1041
BcuI ACTAGT 1 cut(s) 1121
BfaI CTAG 4 cut(s) 522, 927, 1050, 1122
BfuI GTATCC 1 cut(s) 1675
BisI GCNGC 3 cut(s) 213, 380, 828
BlsI GCNGC 3 cut(s) 214, 381, 829
Bme1390I CCNGG 4 cut(s) 541, 611, 612, 1041
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 4 cut(s) 392, 400, 608, 776
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 4 cut(s) 541, 611, 612, 1041
BmsI GCATC 7 cut(s) 35, 97, 419, 466, 517, 719, 1613
BpiI GAAGAC 4 cut(s) 219, 351, 1169, 1680
Bpu10I CCTNAGC 1 cut(s) 1614
BpuMI CCSGG 4 cut(s) 541, 611, 612, 1041
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 21, 610, 1668
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 3 cut(s) 199, 1283, 1398
Bse3DI GCAATG 2 cut(s) 42, 1412
BseAI TCCGGA 1 cut(s) 424
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 21, 610, 1668
BseGI GGATG 9 cut(s) 89, 112, 238, 410, 445, 721, 1498, 1628, 1692
BseLI CCNNNNNNNGG 3 cut(s) 199, 1283, 1398
BseMI GCAATG 2 cut(s) 42, 1412
BseRI GAGGAG 2 cut(s) 1334, 1673
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 5 cut(s) 394, 609, 778, 856, 1039
BshVI ATCGAT 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 5 cut(s) 425, 540, 611, 1040, 1652
BslFI GGGAC 2 cut(s) 379, 745
BslI CCNNNNNNNGG 3 cut(s) 199, 1283, 1398
BsmFI GGGAC 2 cut(s) 379, 745
BsmI GAATGC 4 cut(s) 262, 381, 1141, 1334
BsnI GGCC 5 cut(s) 394, 609, 778, 856, 1039
BsoBI CYCGRG 1 cut(s) 610
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 4 cut(s) 421, 1116, 1342, 1396
BspANI GGCC 5 cut(s) 394, 609, 778, 856, 1039
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 648
BspPI GGATC 1 cut(s) 416
BsrDI GCAATG 2 cut(s) 42, 1412
BssECI CCNNGG 3 cut(s) 21, 610, 1668
BssMI GATC 4 cut(s) 421, 1116, 1342, 1396
BssT1I CCWWGG 1 cut(s) 1668
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 4 cut(s) 261, 657, 703, 845
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 1141
BstDEI CTNAG 4 cut(s) 279, 702, 1307, 1614
BstEII GGTNACC 2 cut(s) 614, 1427
BstF5I GGATG 9 cut(s) 89, 112, 238, 410, 445, 721, 1498, 1628, 1692
BstHHI GCGC 2 cut(s) 1145, 1628
BstKTI GATC 4 cut(s) 424, 1119, 1345, 1399
BstMBI GATC 4 cut(s) 421, 1116, 1342, 1396
BstMWI GCNNNNNNNGC 3 cut(s) 32, 101, 1625
BstPI GGTNACC 2 cut(s) 614, 1427
BstSCI CCNGG 4 cut(s) 539, 609, 610, 1039
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 4 cut(s) 219, 351, 1169, 1680
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 1675
BsuRI GGCC 5 cut(s) 394, 609, 778, 856, 1039
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 9 cut(s) 89, 112, 238, 410, 445, 721, 1498, 1628, 1692
Cac8I GCNNGC 1 cut(s) 1141
CfoI GCGC 2 cut(s) 1145, 1628
Cfr13I GGNCC 4 cut(s) 392, 400, 608, 776
Cfr9I CCCGGG 1 cut(s) 610
ClaI ATCGAT 1 cut(s) 420
Csp6I GTAC 2 cut(s) 9, 1294
CviAII CATG 5 cut(s) 302, 554, 876, 1489, 1721
CviQI GTAC 2 cut(s) 9, 1294
DdeI CTNAG 4 cut(s) 279, 702, 1307, 1614
DpnI GATC 4 cut(s) 423, 1118, 1344, 1398
DpnII GATC 4 cut(s) 421, 1116, 1342, 1396
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 4 cut(s) 261, 657, 703, 845
EarI CTCTTC 4 cut(s) 261, 657, 703, 845
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 1668
Eco47I GGWCC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 610
Eco91I GGTNACC 2 cut(s) 614, 1427
EcoO65I GGTNACC 2 cut(s) 614, 1427
EcoT14I CCWWGG 1 cut(s) 1668
ErhI CCWWGG 1 cut(s) 1668
FaeI CATG 5 cut(s) 305, 557, 879, 1492, 1724
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 2 cut(s) 379, 745
FatI CATG 5 cut(s) 301, 553, 875, 1488, 1720
FauI CCCGC 3 cut(s) 823, 1417, 1612
FauNDI CATATG 2 cut(s) 1453, 1736
FbaI TGATCA 1 cut(s) 1116
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 213, 380, 828
FokI GGATG 9 cut(s) 96, 119, 245, 397, 452, 728, 1505, 1635, 1679
Fsp4HI GCNGC 3 cut(s) 213, 380, 828
FspAI RTGCGCAY 1 cut(s) 1627
FspBI CTAG 4 cut(s) 522, 927, 1050, 1122
FspI TGCGCA 1 cut(s) 1627
GlaI GCGC 2 cut(s) 1144, 1627
GluI GCNGC 3 cut(s) 213, 380, 828
HaeIII GGCC 5 cut(s) 394, 609, 778, 856, 1039
HapII CCGG 5 cut(s) 425, 540, 611, 1040, 1652
HhaI GCGC 2 cut(s) 1145, 1628
Hin1II CATG 5 cut(s) 305, 557, 879, 1492, 1724
Hin6I GCGC 2 cut(s) 1143, 1626
HinP1I GCGC 2 cut(s) 1143, 1626
HindIII AAGCTT 1 cut(s) 1081
HinfI GANTC 5 cut(s) 358, 428, 544, 930, 1044
HpaII CCGG 5 cut(s) 425, 540, 611, 1040, 1652
HphI GGTGA 5 cut(s) 86, 811, 955, 1183, 1564
Hpy166II GTNNAC 4 cut(s) 299, 754, 1014, 1294
Hpy188I TCNGA 4 cut(s) 43, 232, 715, 1683
Hpy188III TCNNGA 5 cut(s) 425, 577, 1346, 1435, 1526
Hpy8I GTNNAC 4 cut(s) 299, 754, 1014, 1294
HpyAV CCTTC 6 cut(s) 329, 652, 901, 943, 1075, 1216
HpyCH4III ACNGT 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 101, 1625
HpyF3I CTNAG 4 cut(s) 279, 702, 1307, 1614
Hsp92II CATG 5 cut(s) 305, 557, 879, 1492, 1724
HspAI GCGC 2 cut(s) 1143, 1626
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 4 cut(s) 421, 1116, 1342, 1396
LmnI GCTCC 2 cut(s) 646, 707
LpnPI CCDG 8 cut(s) 57, 438, 553, 624, 714, 1053, 1665, 1730
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 7 cut(s) 35, 97, 419, 466, 517, 719, 1613
MaeI CTAG 4 cut(s) 522, 927, 1050, 1122
MaeIII GTNAC 5 cut(s) 614, 799, 1045, 1427, 1552
MalI GATC 4 cut(s) 423, 1118, 1344, 1398
MboI GATC 4 cut(s) 421, 1116, 1342, 1396
MlyI GAGTC 2 cut(s) 367, 1053
MmeI TCCRAC 1 cut(s) 21
MroI TCCGGA 1 cut(s) 424
MseI TTAA 2 cut(s) 641, 1326
MspI CCGG 5 cut(s) 425, 540, 611, 1040, 1652
MspR9I CCNGG 4 cut(s) 541, 611, 612, 1041
Mva1269I GAATGC 4 cut(s) 262, 381, 1141, 1334
MwoI GCNNNNNNNGC 3 cut(s) 32, 101, 1625
NciI CCSGG 4 cut(s) 541, 611, 612, 1041
NdeI CATATG 2 cut(s) 1453, 1736
NdeII GATC 4 cut(s) 421, 1116, 1342, 1396
NlaIII CATG 5 cut(s) 305, 557, 879, 1492, 1724
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 3 cut(s) 799, 1045, 1552
NsbI TGCGCA 1 cut(s) 1627
PctI GAATGC 4 cut(s) 262, 381, 1141, 1334
PfeI GAWTC 3 cut(s) 428, 544, 930
PkrI GCNGC 3 cut(s) 214, 381, 829
PleI GAGTC 2 cut(s) 366, 1052
PpsI GAGTC 2 cut(s) 366, 1052
PsiI TTATAA 1 cut(s) 1647
PspEI GGTNACC 2 cut(s) 614, 1427
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 4 cut(s) 392, 400, 608, 776
PsrI GAACNNNNNNTAC 2 cut(s) 1430, 1462
RsaI GTAC 2 cut(s) 10, 1295
RsaNI GTAC 2 cut(s) 9, 1294
SaqAI TTAA 2 cut(s) 641, 1326
SatI GCNGC 3 cut(s) 213, 380, 828
Sau3AI GATC 4 cut(s) 421, 1116, 1342, 1396
Sau96I GGNCC 4 cut(s) 392, 400, 608, 776
SchI GAGTC 2 cut(s) 367, 1053
ScrFI CCNGG 4 cut(s) 541, 611, 612, 1041
SfaNI GCATC 7 cut(s) 35, 97, 419, 466, 517, 719, 1613
SinI GGWCC 1 cut(s) 400
SmaI CCCGGG 1 cut(s) 612
SpeI ACTAGT 1 cut(s) 1121
SspI AATATT 1 cut(s) 1177
SspMI CTAG 4 cut(s) 522, 927, 1050, 1122
StyD4I CCNGG 4 cut(s) 539, 609, 610, 1039
StyI CCWWGG 1 cut(s) 1668
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 3 cut(s) 172, 420, 588
TauI GCSGC 2 cut(s) 382, 830
TfiI GAWTC 3 cut(s) 428, 544, 930
Tru1I TTAA 2 cut(s) 641, 1326
Tru9I TTAA 2 cut(s) 641, 1326
TseFI GTSAC 3 cut(s) 799, 1045, 1552
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 3 cut(s) 799, 1045, 1552
TspGWI ACGGA 2 cut(s) 818, 1311
TspMI CCCGGG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 1 cut(s) 835
XcmI CCANNNNNNNNNTGG 1 cut(s) 864
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 4 cut(s) 522, 927, 1050, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.