AT5G31412

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000698
Physical Location & Seq
Reverse (-)
11541463 .. 11543768
2306 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G31412.1

Sequence Viewer

Length: 1302 bp
ATGGATCCACCAGCTCCAACATATGTAGGTTCAGACGTAACACCATCACTTAAGAGAAACTCGAATGGTATCGGTTGGGAATATGAGATTGTGTGTAATCCAAAGAATCCAGATAGGATTAAATGCAAGTTGTGTTTGAAAGAGATGTCTGGAGGAGTGTATCGGATTAAAGAACACATTGCCCACCTCCCAGGAAATGTTGTTGCATGTCCGAAAAGCTTGAAGATGAATAAGTTTGCAACATATATTCATCCTGAAGCTCGTGTTGGTACACAAATAAGACAACAGAACATCAATATTGTGCAAGATGGATGTATTGTGCAAGATGGATGCATCAATAAGGAGGAACAAGAAAGACCTAAAGTGCTCTTAAAGACTCAAAAGGCAGGATGGAAACAAAACGGTGTCATGACTGATGCATGGAGCGACATGAAAAGAAGGAGCATAATGAATCTATGTGTTAATTCTAAGGGAGGAAAATGTTTTCTGTCTTCTAAAGACGCTTCCACAAATTCTCACACAGGGCTATACATCTTTGAGTATGTTGATCGATGCATTGCAGATGTTGGTGCGAAGAATGTTGTTCAAGTGGTTACAGATAATGCGCTCAATAATGTTACAGCAGCGAAGATGCTTAAAGAAAAGAGGCCAAATATTTTTTGGACAGGTTGTGTTGCTCATACGGTTGATCTGATGCTTGAAGCCATTTCTAAGCTGCCTAAAATGGGAAAAATGCAAACATTCGGCGACTACAAAGGGGAAAACTTGTTTCTTAACCGTTATGAGTCCTGCGTTTTGGAGTGGTGTGATGTTTGTGTTGAAGATTTTGGACCTTTAATGAAATTGCTAAGACTAGCTGATGGAGAAAACAAGCCTTTCGTGGGTTTTATTTTTGGAGAGCTCCTAGAAGTAAGAAATAAGATTACGATCGCTTGTAATAATCTGGAGAGGAATTACAAACCAATATTCGATATCATTGATGAGAAAATGAAAGGGAGACTTGACTCTTGGAATTGGTGGTCATTATATGGTTGTCATGTGCCTACTTTGCAAAGATTAGCAATAAAGATTCTCTCTTTAACACCTAGCTCATCTAGTTTTGAACGTAATTGGAGTGCTTTTGAAGGGCCAAGCGAAAGAGATGAAGAGCCTAATGGTGAGCCTGTTTACCAAACTCCAAATGAGAAACCTAGAGAAGATCTTGAATCTCATGAAGAGCATGATATCACTATTGATATTGAATTTGAATCAGATAATGAGCAGGTGGTGAATGTGGATGTGATCAGAGGACAAGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

433

Amino Acids

49.12

Weight (kDa)

5.88

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 114 - 244 1.1e-41 Domain of unknown function (DUF659)
Dimer_Tnp_hAT PF05699 331 - 374 1.5e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1252
Acc36I ACCTGC 1 cut(s) 1252
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 511, 1241
AcuI CTGAAG 1 cut(s) 276
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 2 cut(s) 725, 881
AflII CTTAAG 1 cut(s) 50
AjnI CCWGG 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 249, 281
AluBI AGCT 7 cut(s) 14, 219, 260, 715, 857, 901, 1089
AluI AGCT 7 cut(s) 14, 219, 260, 715, 857, 901, 1089
Alw21I GWGCWC 2 cut(s) 369, 903
Alw26I GTCTC 1 cut(s) 991
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 647, 1127
ApeKI GCWGC 2 cut(s) 623, 715
ApoI RAATTY 2 cut(s) 511, 1241
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 2 cut(s) 830, 1127
AsuHPI GGTGA 2 cut(s) 1169, 1279
AvaII GGWCC 1 cut(s) 830
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 903
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 2 cut(s) 369, 903
BbvI GCAGC 2 cut(s) 635, 702
BccI CCATC 5 cut(s) 52, 302, 320, 384, 854
BciT130I CCWGG 1 cut(s) 192
BclI TGATCA 1 cut(s) 1281
BcoDI GTCTC 1 cut(s) 991
BfaI CTAG 5 cut(s) 854, 905, 1086, 1095, 1191
BfrI CTTAAG 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 1252
BglII AGATCT 1 cut(s) 1198
BisI GCNGC 2 cut(s) 624, 716
BlsI GCNGC 2 cut(s) 625, 717
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 2 cut(s) 830, 1127
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 6 cut(s) 320, 342, 406, 542, 621, 684
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 2 cut(s) 171, 965
Bsa29I ATCGAT 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 926
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 725, 881
Bse3DI GCAATG 2 cut(s) 177, 555
Bse8I GATNNNNATC 1 cut(s) 926
BseBI CCWGG 1 cut(s) 192
BseCI ATCGAT 1 cut(s) 550
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 5 cut(s) 250, 317, 335, 395, 1282
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 2 cut(s) 725, 881
BseMI GCAATG 2 cut(s) 177, 555
BseRI GAGGAG 1 cut(s) 168
BseXI GCAGC 2 cut(s) 635, 702
Bsh1285I CGRYCG 1 cut(s) 930
BshFI GGCC 2 cut(s) 649, 1129
BshVI ATCGAT 1 cut(s) 550
BsiEI CGRYCG 1 cut(s) 930
BsiHKAI GWGCWC 2 cut(s) 369, 903
BslI CCNNNNNNNGG 2 cut(s) 725, 881
BsmAI GTCTC 1 cut(s) 991
BsnI GGCC 2 cut(s) 649, 1129
Bsp1286I GDGCHC 2 cut(s) 369, 903
Bsp143I GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
BspANI GGCC 2 cut(s) 649, 1129
BspDI ATCGAT 1 cut(s) 550
BspHI TCATGA 2 cut(s) 408, 1210
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 1252
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 2 cut(s) 1140, 1209
BspTI CTTAAG 1 cut(s) 50
BsrDI GCAATG 2 cut(s) 177, 555
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 3 cut(s) 404, 685, 779
Bst6I CTCTTC 2 cut(s) 1140, 1209
BstAFI CTTAAG 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 468, 711, 848
BstF5I GGATG 5 cut(s) 250, 317, 335, 395, 1282
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 6 cut(s) 7, 550, 691, 930, 1201, 1284
BstMAI GTCTC 1 cut(s) 991
BstMBI GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
BstMCI CGRYCG 1 cut(s) 930
BstMWI GCNNNNNNNGC 1 cut(s) 1048
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 635, 702
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 2 cut(s) 4, 1198
BstYI RGATCY 2 cut(s) 4, 1198
Bsu15I ATCGAT 1 cut(s) 550
BsuRI GGCC 2 cut(s) 649, 1129
BsuTUI ATCGAT 1 cut(s) 550
BtsCI GGATG 5 cut(s) 250, 317, 335, 395, 1282
BveI ACCTGC 1 cut(s) 1252
CciI TCATGA 2 cut(s) 408, 1210
CfoI GCGC 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 830, 1127
ClaI ATCGAT 1 cut(s) 550
CseI GACGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 270
CviAII CATG 7 cut(s) 207, 409, 420, 430, 1037, 1211, 1220
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 3 cut(s) 468, 711, 848
DpnI GATC 6 cut(s) 6, 549, 690, 929, 1200, 1283
DpnII GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
Eam1104I CTCTTC 2 cut(s) 1140, 1209
EarI CTCTTC 2 cut(s) 1140, 1209
Ecl136II GAGCTC 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 903
Eco32I GATATC 2 cut(s) 973, 1225
Eco47I GGWCC 1 cut(s) 830
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 190
EcoRV GATATC 2 cut(s) 973, 1225
EcoT22I ATGCAT 3 cut(s) 335, 421, 557
EcoT38I GRGCYC 1 cut(s) 903
FaeI CATG 7 cut(s) 210, 412, 423, 433, 1040, 1214, 1223
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FatI CATG 7 cut(s) 206, 408, 419, 429, 1036, 1210, 1219
FauNDI CATATG 1 cut(s) 22
FbaI TGATCA 1 cut(s) 1281
Fnu4HI GCNGC 2 cut(s) 624, 716
FokI GGATG 5 cut(s) 237, 324, 342, 402, 1289
FriOI GRGCYC 1 cut(s) 903
Fsp4HI GCNGC 2 cut(s) 624, 716
FspBI CTAG 5 cut(s) 854, 905, 1086, 1095, 1191
GlaI GCGC 1 cut(s) 606
GluI GCNGC 2 cut(s) 624, 716
GsuI CTGGAG 2 cut(s) 171, 965
HaeIII GGCC 2 cut(s) 649, 1129
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 607
Hin1II CATG 7 cut(s) 210, 412, 423, 433, 1040, 1214, 1223
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 8 cut(s) 106, 376, 451, 785, 1004, 1069, 1205, 1247
HphI GGTGA 2 cut(s) 1169, 1279
Hpy166II GTNNAC 2 cut(s) 272, 1168
Hpy188I TCNGA 6 cut(s) 34, 165, 213, 693, 1252, 1286
Hpy188III TCNNGA 7 cut(s) 110, 150, 254, 409, 944, 1202, 1211
Hpy8I GTNNAC 2 cut(s) 272, 1168
HpyAV CCTTC 2 cut(s) 432, 1118
HpyCH4III ACNGT 3 cut(s) 404, 685, 779
HpyCH4IV ACGT 2 cut(s) 36, 1105
HpyF10VI GCNNNNNNNGC 1 cut(s) 1048
HpyF3I CTNAG 3 cut(s) 468, 711, 848
HpySE526I ACGT 2 cut(s) 36, 1105
Hsp92II CATG 7 cut(s) 210, 412, 423, 433, 1040, 1214, 1223
HspAI GCGC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 1281
Kzo9I GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
LguI GCTCTTC 2 cut(s) 1140, 1209
LmnI GCTCC 4 cut(s) 19, 423, 441, 906
Lsp1109I GCAGC 2 cut(s) 635, 702
LweI GCATC 6 cut(s) 320, 342, 406, 542, 621, 684
MaeI CTAG 5 cut(s) 854, 905, 1086, 1095, 1191
MaeII ACGT 2 cut(s) 36, 1105
MaeIII GTNAC 3 cut(s) 37, 592, 616
MalI GATC 6 cut(s) 6, 549, 690, 929, 1200, 1283
MboI GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
MboII GAAGA 8 cut(s) 235, 483, 586, 640, 833, 1157, 1208, 1226
MflI RGATCY 2 cut(s) 4, 1198
MhlI GDGCHC 2 cut(s) 369, 903
MluCI AATT 7 cut(s) 463, 511, 842, 952, 1012, 1108, 1241
MlyI GAGTC 3 cut(s) 370, 794, 998
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 7 cut(s) 146, 197, 337, 467, 639, 942, 1280
Mph1103I ATGCAT 3 cut(s) 335, 421, 557
MseI TTAA 9 cut(s) 51, 120, 168, 371, 462, 636, 774, 836, 1079
MspCI CTTAAG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 1048
NdeI CATATG 1 cut(s) 22
NdeII GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
NlaIII CATG 7 cut(s) 210, 412, 423, 433, 1040, 1214, 1223
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 3 cut(s) 335, 421, 557
NspI RCATGY 1 cut(s) 210
PagI TCATGA 2 cut(s) 408, 1210
PaqCI CACCTGC 1 cut(s) 1252
PciSI GCTCTTC 2 cut(s) 1140, 1209
PfeI GAWTC 5 cut(s) 106, 451, 1069, 1205, 1247
PkrI GCNGC 2 cut(s) 625, 717
Ple19I CGATCG 1 cut(s) 930
PleI GAGTC 3 cut(s) 370, 793, 998
PpsI GAGTC 3 cut(s) 370, 793, 998
Psp124BI GAGCTC 1 cut(s) 903
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 830, 1127
PsuI RGATCY 2 cut(s) 4, 1198
PvuI CGATCG 1 cut(s) 930
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SacI GAGCTC 1 cut(s) 903
SapI GCTCTTC 2 cut(s) 1140, 1209
SaqAI TTAA 9 cut(s) 51, 120, 168, 371, 462, 636, 774, 836, 1079
SatI GCNGC 2 cut(s) 624, 716
Sau3AI GATC 6 cut(s) 4, 547, 688, 927, 1198, 1281
Sau96I GGNCC 2 cut(s) 830, 1127
SchI GAGTC 3 cut(s) 370, 794, 998
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 2 cut(s) 369, 903
SfaNI GCATC 6 cut(s) 320, 342, 406, 542, 621, 684
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 7 cut(s) 463, 511, 842, 952, 1012, 1108, 1241
SspI AATATT 3 cut(s) 298, 655, 966
SspMI CTAG 5 cut(s) 854, 905, 1086, 1095, 1191
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 3 cut(s) 404, 685, 779
TaiI ACGT 2 cut(s) 39, 1108
TaqI TCGA 3 cut(s) 62, 550, 969
TasI AATT 7 cut(s) 463, 511, 842, 952, 1012, 1108, 1241
TfiI GAWTC 5 cut(s) 106, 451, 1069, 1205, 1247
Tru1I TTAA 9 cut(s) 51, 120, 168, 371, 462, 636, 774, 836, 1079
Tru9I TTAA 9 cut(s) 51, 120, 168, 371, 462, 636, 774, 836, 1079
TseI GCWGC 2 cut(s) 623, 715
TspDTI ATGAA 8 cut(s) 239, 242, 446, 464, 854, 1004, 1158, 1227
Vha464I CTTAAG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 511, 1241
XceI RCATGY 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 657
XspI CTAG 5 cut(s) 854, 905, 1086, 1095, 1191
Zsp2I ATGCAT 3 cut(s) 335, 421, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.