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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 999 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 759 |
| Acc16I | TGCGCA | 1 cut(s) | 979 |
| AccI | GTMKAC | 1 cut(s) | 751 |
| AccIII | TCCGGA | 1 cut(s) | 1091 |
| AciI | CCGC | 5 cut(s) | 212, 518, 521, 776, 971 |
| AclWI | GGATC | 3 cut(s) | 1120, 1133, 1351 |
| AcsI | RAATTY | 3 cut(s) | 43, 1392, 1514 |
| AfaI | GTAC | 2 cut(s) | 1038, 1491 |
| AfeI | AGCGCT | 1 cut(s) | 1114 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 12, 635, 1278 |
| AhlI | ACTAGT | 1 cut(s) | 1322 |
| AluBI | AGCT | 6 cut(s) | 345, 449, 468, 1086, 1262, 1368 |
| AluI | AGCT | 6 cut(s) | 345, 449, 468, 1086, 1262, 1368 |
| Alw26I | GTCTC | 1 cut(s) | 860 |
| AlwI | GGATC | 3 cut(s) | 1120, 1133, 1351 |
| Aor13HI | TCCGGA | 1 cut(s) | 1091 |
| Aor51HI | AGCGCT | 1 cut(s) | 1114 |
| AoxI | GGCC | 3 cut(s) | 239, 422, 1269 |
| ApoI | RAATTY | 3 cut(s) | 43, 1392, 1514 |
| AspLEI | GCGC | 2 cut(s) | 980, 1115 |
| AspS9I | GGNCC | 2 cut(s) | 161, 1270 |
| AsuC2I | CCSGG | 2 cut(s) | 115, 426 |
| AsuHPI | GGTGA | 6 cut(s) | 196, 337, 340, 535, 916, 1307 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| BamHI | GGATCC | 1 cut(s) | 1125 |
| BccI | CCATC | 9 cut(s) | 359, 466, 608, 637, 725, 728, 938, 1272, 1283 |
| BciVI | GTATCC | 1 cut(s) | 1059 |
| BcnI | CCSGG | 2 cut(s) | 115, 426 |
| BcoDI | GTCTC | 1 cut(s) | 860 |
| BcuI | ACTAGT | 1 cut(s) | 1322 |
| BfaI | CTAG | 6 cut(s) | 312, 435, 1151, 1250, 1323, 1493 |
| BfoI | RGCGCY | 1 cut(s) | 1116 |
| BfuI | GTATCC | 1 cut(s) | 1059 |
| BisI | GCNGC | 2 cut(s) | 213, 519 |
| BlsI | GCNGC | 2 cut(s) | 214, 520 |
| BmcAI | AGTACT | 1 cut(s) | 1491 |
| Bme1390I | CCNGG | 2 cut(s) | 115, 426 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 2 cut(s) | 161, 1270 |
| BmiI | GGNNCC | 1 cut(s) | 1127 |
| BmrFI | CCNGG | 2 cut(s) | 115, 426 |
| BmsI | GCATC | 2 cut(s) | 104, 965 |
| Bpu10I | CCTNAGC | 1 cut(s) | 966 |
| BpuEI | CTTGAG | 1 cut(s) | 842 |
| BpuMI | CCSGG | 2 cut(s) | 115, 426 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1314 |
| BsaJI | CCNNGG | 3 cut(s) | 666, 745, 1273 |
| BsaWI | WCCGGW | 3 cut(s) | 21, 1003, 1091 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1372, 1402 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 12, 635, 1278 |
| Bse3DI | GCAATG | 1 cut(s) | 764 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1314 |
| BseAI | TCCGGA | 1 cut(s) | 1091 |
| BseDI | CCNNGG | 3 cut(s) | 666, 745, 1273 |
| BseJI | GATNNNNATC | 1 cut(s) | 1314 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 12, 635, 1278 |
| BseMI | GCAATG | 1 cut(s) | 764 |
| BseRI | GAGGAG | 3 cut(s) | 686, 1433, 1496 |
| Bsh1285I | CGRYCG | 1 cut(s) | 22 |
| BshFI | GGCC | 3 cut(s) | 241, 424, 1271 |
| BsiEI | CGRYCG | 1 cut(s) | 22 |
| BsiSI | CCGG | 5 cut(s) | 22, 114, 425, 1004, 1092 |
| BslFI | GGGAC | 2 cut(s) | 130, 699 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 12, 635, 1278 |
| BsmAI | GTCTC | 1 cut(s) | 860 |
| BsmFI | GGGAC | 2 cut(s) | 130, 699 |
| BsmI | GAATGC | 1 cut(s) | 686 |
| BsnI | GGCC | 3 cut(s) | 241, 424, 1271 |
| Bsp13I | TCCGGA | 1 cut(s) | 1091 |
| Bsp143I | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| BspACI | CCGC | 5 cut(s) | 212, 518, 521, 776, 971 |
| BspANI | GGCC | 3 cut(s) | 241, 424, 1271 |
| BspEI | TCCGGA | 1 cut(s) | 1091 |
| BspHI | TCATGA | 2 cut(s) | 39, 1414 |
| BspLI | GGNNCC | 1 cut(s) | 1127 |
| BspPI | GGATC | 3 cut(s) | 1120, 1133, 1351 |
| BsrDI | GCAATG | 1 cut(s) | 764 |
| BssECI | CCNNGG | 3 cut(s) | 666, 745, 1273 |
| BssMI | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| BssT1I | CCWWGG | 2 cut(s) | 666, 1273 |
| Bst6I | CTCTTC | 4 cut(s) | 230, 949, 1208, 1434 |
| BstC8I | GCNNGC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 4 cut(s) | 87, 659, 966, 1369 |
| BstDSI | CCRYGG | 1 cut(s) | 745 |
| BstEII | GGTNACC | 1 cut(s) | 779 |
| BstH2I | RGCGCY | 1 cut(s) | 1116 |
| BstHHI | GCGC | 2 cut(s) | 980, 1115 |
| BstKTI | GATC | 5 cut(s) | 697, 1128, 1203, 1318, 1346 |
| BstMAI | GTCTC | 1 cut(s) | 860 |
| BstMBI | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| BstMCI | CGRYCG | 1 cut(s) | 22 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 539, 977, 1259, 1268 |
| BstNSI | RCATGY | 2 cut(s) | 497, 1257 |
| BstPI | GGTNACC | 1 cut(s) | 779 |
| BstSCI | CCNGG | 2 cut(s) | 113, 424 |
| BstX2I | RGATCY | 1 cut(s) | 1125 |
| BstYI | RGATCY | 1 cut(s) | 1125 |
| BsuI | GTATCC | 1 cut(s) | 1059 |
| BsuRI | GGCC | 3 cut(s) | 241, 424, 1271 |
| BtgI | CCRYGG | 1 cut(s) | 745 |
| Cac8I | GCNNGC | 1 cut(s) | 495 |
| CciI | TCATGA | 2 cut(s) | 39, 1414 |
| CfoI | GCGC | 2 cut(s) | 980, 1115 |
| Cfr13I | GGNCC | 2 cut(s) | 161, 1270 |
| Csp6I | GTAC | 2 cut(s) | 1037, 1490 |
| CviAII | CATG | 6 cut(s) | 40, 261, 494, 841, 1254, 1415 |
| CviQI | GTAC | 2 cut(s) | 1037, 1490 |
| DdeI | CTNAG | 4 cut(s) | 87, 659, 966, 1369 |
| DpnI | GATC | 5 cut(s) | 696, 1127, 1202, 1317, 1345 |
| DpnII | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 759 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 759 |
| Eam1104I | CTCTTC | 4 cut(s) | 230, 949, 1208, 1434 |
| EarI | CTCTTC | 4 cut(s) | 230, 949, 1208, 1434 |
| Eco130I | CCWWGG | 2 cut(s) | 666, 1273 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco47III | AGCGCT | 1 cut(s) | 1114 |
| Eco91I | GGTNACC | 1 cut(s) | 779 |
| EcoO65I | GGTNACC | 1 cut(s) | 779 |
| EcoRI | GAATTC | 1 cut(s) | 1392 |
| EcoT14I | CCWWGG | 2 cut(s) | 666, 1273 |
| EcoT22I | ATGCAT | 1 cut(s) | 149 |
| ErhI | CCWWGG | 2 cut(s) | 666, 1273 |
| FaeI | CATG | 6 cut(s) | 43, 264, 497, 844, 1257, 1418 |
| FaqI | GGGAC | 2 cut(s) | 130, 699 |
| FatI | CATG | 6 cut(s) | 39, 260, 493, 840, 1253, 1414 |
| FauI | CCCGC | 2 cut(s) | 769, 964 |
| FauNDI | CATATG | 1 cut(s) | 805 |
| FblI | GTMKAC | 1 cut(s) | 751 |
| Fnu4HI | GCNGC | 2 cut(s) | 213, 519 |
| Fsp4HI | GCNGC | 2 cut(s) | 213, 519 |
| FspAI | RTGCGCAY | 1 cut(s) | 979 |
| FspBI | CTAG | 6 cut(s) | 312, 435, 1151, 1250, 1323, 1493 |
| FspI | TGCGCA | 1 cut(s) | 979 |
| GlaI | GCGC | 2 cut(s) | 979, 1114 |
| GluI | GCNGC | 2 cut(s) | 213, 519 |
| HaeII | RGCGCY | 1 cut(s) | 1116 |
| HaeIII | GGCC | 3 cut(s) | 241, 424, 1271 |
| HapII | CCGG | 5 cut(s) | 22, 114, 425, 1004, 1092 |
| HhaI | GCGC | 2 cut(s) | 980, 1115 |
| Hin1II | CATG | 6 cut(s) | 43, 264, 497, 844, 1257, 1418 |
| Hin6I | GCGC | 2 cut(s) | 978, 1113 |
| HinP1I | GCGC | 2 cut(s) | 978, 1113 |
| HincII | GTYRAC | 1 cut(s) | 752 |
| HindII | GTYRAC | 1 cut(s) | 752 |
| HindIII | AAGCTT | 1 cut(s) | 466 |
| HinfI | GANTC | 4 cut(s) | 280, 315, 429, 1310 |
| HpaII | CCGG | 5 cut(s) | 22, 114, 425, 1004, 1092 |
| HphI | GGTGA | 6 cut(s) | 196, 337, 340, 535, 916, 1307 |
| Hpy166II | GTNNAC | 3 cut(s) | 139, 399, 752 |
| Hpy188I | TCNGA | 3 cut(s) | 100, 1315, 1435 |
| Hpy188III | TCNNGA | 9 cut(s) | 40, 698, 787, 821, 878, 1092, 1347, 1397, 1415 |
| Hpy8I | GTNNAC | 3 cut(s) | 139, 399, 752 |
| HpyAV | CCTTC | 3 cut(s) | 59, 508, 568 |
| HpyCH4IV | ACGT | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 9 cut(s) | 147, 266, 365, 443, 463, 497, 769, 922, 1048 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 539, 977, 1259, 1268 |
| HpyF3I | CTNAG | 4 cut(s) | 87, 659, 966, 1369 |
| HpySE526I | ACGT | 1 cut(s) | 119 |
| Hsp92II | CATG | 6 cut(s) | 43, 264, 497, 844, 1257, 1418 |
| HspAI | GCGC | 2 cut(s) | 978, 1113 |
| Kpn2I | TCCGGA | 1 cut(s) | 1091 |
| Kzo9I | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| LmnI | GCTCC | 2 cut(s) | 15, 1110 |
| LpnPI | CCDG | 6 cut(s) | 35, 127, 438, 891, 1017, 1105 |
| LweI | GCATC | 2 cut(s) | 104, 965 |
| MaeI | CTAG | 6 cut(s) | 312, 435, 1151, 1250, 1323, 1493 |
| MaeII | ACGT | 1 cut(s) | 119 |
| MaeIII | GTNAC | 4 cut(s) | 184, 430, 779, 904 |
| MalI | GATC | 5 cut(s) | 696, 1127, 1202, 1317, 1345 |
| MboI | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| MfeI | CAATTG | 1 cut(s) | 55 |
| MflI | RGATCY | 1 cut(s) | 1125 |
| MlyI | GAGTC | 1 cut(s) | 438 |
| MmeI | TCCRAC | 2 cut(s) | 139, 1315 |
| Mph1103I | ATGCAT | 1 cut(s) | 149 |
| MroI | TCCGGA | 1 cut(s) | 1091 |
| MseI | TTAA | 1 cut(s) | 678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1093 |
| MspI | CCGG | 5 cut(s) | 22, 114, 425, 1004, 1092 |
| MspR9I | CCNGG | 2 cut(s) | 115, 426 |
| MunI | CAATTG | 1 cut(s) | 55 |
| Mva1269I | GAATGC | 1 cut(s) | 686 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 539, 977, 1259, 1268 |
| NciI | CCSGG | 2 cut(s) | 115, 426 |
| NdeI | CATATG | 1 cut(s) | 805 |
| NdeII | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| NlaIII | CATG | 6 cut(s) | 43, 264, 497, 844, 1257, 1418 |
| NlaIV | GGNNCC | 1 cut(s) | 1127 |
| NmuCI | GTSAC | 3 cut(s) | 184, 430, 904 |
| NsbI | TGCGCA | 1 cut(s) | 979 |
| NsiI | ATGCAT | 1 cut(s) | 149 |
| NspI | RCATGY | 2 cut(s) | 497, 1257 |
| PaeI | GCATGC | 1 cut(s) | 497 |
| PagI | TCATGA | 2 cut(s) | 39, 1414 |
| PctI | GAATGC | 1 cut(s) | 686 |
| PfeI | GAWTC | 3 cut(s) | 280, 315, 1310 |
| PkrI | GCNGC | 2 cut(s) | 214, 520 |
| PleI | GAGTC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 437 |
| PsiI | TTATAA | 1 cut(s) | 999 |
| PspEI | GGTNACC | 1 cut(s) | 779 |
| PspN4I | GGNNCC | 1 cut(s) | 1127 |
| PspPI | GGNCC | 2 cut(s) | 161, 1270 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 782, 814 |
| PsuI | RGATCY | 1 cut(s) | 1125 |
| RsaI | GTAC | 2 cut(s) | 1038, 1491 |
| RsaNI | GTAC | 2 cut(s) | 1037, 1490 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1093 |
| SalI | GTCGAC | 1 cut(s) | 750 |
| SaqAI | TTAA | 1 cut(s) | 678 |
| SatI | GCNGC | 2 cut(s) | 213, 519 |
| Sau3AI | GATC | 5 cut(s) | 694, 1125, 1200, 1315, 1343 |
| Sau96I | GGNCC | 2 cut(s) | 161, 1270 |
| ScaI | AGTACT | 1 cut(s) | 1491 |
| SchI | GAGTC | 1 cut(s) | 438 |
| ScrFI | CCNGG | 2 cut(s) | 115, 426 |
| SfaNI | GCATC | 2 cut(s) | 104, 965 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1093 |
| SmlI | CTYRAG | 1 cut(s) | 821 |
| SmoI | CTYRAG | 1 cut(s) | 821 |
| SpeI | ACTAGT | 1 cut(s) | 1322 |
| SphI | GCATGC | 1 cut(s) | 497 |
| SsiI | CCGC | 5 cut(s) | 212, 518, 521, 776, 971 |
| SspI | AATATT | 2 cut(s) | 529, 1021 |
| SspMI | CTAG | 6 cut(s) | 312, 435, 1151, 1250, 1323, 1493 |
| StyD4I | CCNGG | 2 cut(s) | 113, 424 |
| StyI | CCWWGG | 2 cut(s) | 666, 1273 |
| TaiI | ACGT | 1 cut(s) | 122 |
| TaqI | TCGA | 2 cut(s) | 751, 1476 |
| TaqII | GACCGA | 1 cut(s) | 20 |
| TatI | WGTACW | 1 cut(s) | 1489 |
| TauI | GCSGC | 2 cut(s) | 215, 521 |
| TfiI | GAWTC | 3 cut(s) | 280, 315, 1310 |
| Tru1I | TTAA | 1 cut(s) | 678 |
| Tru9I | TTAA | 1 cut(s) | 678 |
| TseFI | GTSAC | 3 cut(s) | 184, 430, 904 |
| Tsp45I | GTSAC | 3 cut(s) | 184, 430, 904 |
| TspDTI | ATGAA | 9 cut(s) | 56, 242, 249, 1062, 1238, 1314, 1403, 1452, 1518 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |
| XapI | RAATTY | 3 cut(s) | 43, 1392, 1514 |
| XceI | RCATGY | 2 cut(s) | 497, 1257 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 249 |
| XmiI | GTMKAC | 1 cut(s) | 751 |
| XspI | CTAG | 6 cut(s) | 312, 435, 1151, 1250, 1323, 1493 |
| ZrmI | AGTACT | 1 cut(s) | 1491 |
| Zsp2I | ATGCAT | 1 cut(s) | 149 |