MD07G1147000.v1.1

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000698
Physical Location & Seq
Reverse (-)
21462796 .. 21465151
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1147000.v1.1.491

Sequence Viewer

Length: 330 bp
ATGACTGGTACCTCATCTTCTGGAGCATCTAATGCAATGTCGTCCTCCTCTCAAACTGAAAATGTGTTGAAGCGTAGCTCGGAAGATGTGGGATGGGAATATGGGATCTTGGCAAATCCTACAAACTCAGATAAGATGAAATTTGCATGGTGGTATAATTATGGAAATGGTGTGCCTAATTTGCAAAGGATGGCTATAAAGATACTCTCATTGACTACAAGTTCATCCGGTTGTGAAAGAAATTGGAGTTCTTTTGAAGATGTGAACTTGTTTTTGAGAACTGCTTTGTTCCAGAAGAAAATGTTCTCGGGCAGGAAGGAAAAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

110

Amino Acids

12.18

Weight (kDa)

9.41

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 49 - 88 2.7e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 10
AgsI TTSAA 2 cut(s) 70, 257
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AlwI GGATC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 307
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 307
BanI GGYRCC 1 cut(s) 8
BarI GAAGNNNNNNTAC 1 cut(s) 33
BccI CCATC 2 cut(s) 87, 184
BmeT110I CYCGRG 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 10
BmsI GCATC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 3 cut(s) 98, 195, 224
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 37
BshNI GGYRCC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 307
BsiSI CCGG 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 307
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 10
BssMI GATC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 127
BstF5I GGATG 3 cut(s) 98, 195, 224
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 32, 181
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BtsCI GGATG 3 cut(s) 98, 195, 224
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 147
CviJI RGCY 2 cut(s) 78, 194
CviKI_1 RGCY 2 cut(s) 78, 194
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 127
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 307
FaeI CATG 1 cut(s) 150
FaiI YATR 5 cut(s) 102, 148, 156, 162, 197
FatI CATG 1 cut(s) 146
FokI GGATG 3 cut(s) 105, 202, 211
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 1 cut(s) 228
Hin1II CATG 1 cut(s) 150
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 82, 130
Hpy188III TCNNGA 2 cut(s) 21, 292
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 35, 146, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 181
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 1 cut(s) 150
KpnI GGTACC 1 cut(s) 12
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 4 cut(s) 6, 241, 298, 305
LweI GCATC 1 cut(s) 35
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 4 cut(s) 9, 95, 269, 307
MflI RGATCY 1 cut(s) 105
MluCI AATT 4 cut(s) 140, 157, 178, 241
MnlI CCTC 3 cut(s) 22, 55, 58
MroXI GAANNNNTTC 1 cut(s) 302
MspI CCGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 32, 181
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 150
NlaIV GGNNCC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 105
SetI ASST 3 cut(s) 14, 80, 327
SfaNI GCATC 1 cut(s) 35
Sse9I AATT 4 cut(s) 140, 157, 178, 241
TasI AATT 4 cut(s) 140, 157, 178, 241
TspDTI ATGAA 2 cut(s) 152, 213
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.