Prupe.4G255800_v2.0.a1

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000698
Physical Location & Seq
Forward (+)
17895837 .. 17899200
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G255800.1

Sequence Viewer

Length: 969 bp
ATGAGAAAAGGTGGACAAGAGTGTGCAACAAAAAGGTTGAAGACACCACAACCCGCAACGACCCCTTGCCCAACCGCCGCGACTCTTGACCAGCGACTCCCCCTCTCCAAGCCGCTGCGACCCTCTTTCTCCCAAAGAACACATAAATTGCATCAATATTTGGCTCAATGGGTGTATGAAGCATGTATTCCTTTTCATGCTATCGATAATAATAGTTTCAAAAGATTTGTGGAAGTGGTTGACCAATTTGGTTCAGATTACCGACCTCCAAGCCAATACCAATTAAGGGAGCCACTATTGAAGGAAAAGGAAGACTCCGAGGAAGCACACACCAGGTCATATATCTTTGAATATATTTACAAGTGCATTGAAGAAATCGGGCCACAAAATGTAGTTCAAGTGGTGACAAACAATGCTTCTAATAATATGGAAGCCGCAAATATGTTGAAGAGAAGGAGAAGAGGCCAAACATCAATTGGTAACCTACCTAGGTTCAAAAGAGTGATTGAGAAGGCAAAGTCATTCACTATCTTCATATACGCCCATCATAACACATTGGCATTGATGAGGAAGTATACGAAAAGAAGAGATATAGTGAGGCAGGGAGTAATTAGATTTGCAACTTCTTTCCTAACTTTGCAAATCTTGACAGAAAAGAATAATGAATTGAGATCTATGGTTGCTAGTGATGCATGGGATCAATGCAAACATTGCAAGACTACAGAGAGGAAAGCGATATATTCCACCATTTTGAGTATAGCTTTTTGGAATTGGGTATCCCTTTGCTTGAGAGTGTTTGATCCTTTAGTTAAGGTGATTCACCTTGTTGATAGGGATAAAAGTCCATCAATGTCTTTTTTGTATGGAGAACTACTACAAGAAAAGGAAGAGATTAAAGAAGCATTCAAAAATCACGAGGCCAACTATCATCTAATCCTACAAATTGTTGATGCAAAAGCCCATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

323

Amino Acids

37.51

Weight (kDa)

9.49

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 575
AccII CGCG 1 cut(s) 80
AciI CCGC 5 cut(s) 54, 75, 78, 113, 435
AclWI GGATC 2 cut(s) 705, 794
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 9 cut(s) 40, 220, 301, 350, 371, 398, 448, 496, 907
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 1 cut(s) 761
AluI AGCT 1 cut(s) 761
AlwI GGATC 2 cut(s) 705, 794
AoxI GGCC 3 cut(s) 380, 463, 918
ApeKI GCWGC 1 cut(s) 115
AspA2I CCTAGG 1 cut(s) 488
AspS9I GGNCC 1 cut(s) 380
AsuHPI GGTGA 3 cut(s) 415, 812, 826
AvrII CCTAGG 1 cut(s) 488
BauI CACGAG 1 cut(s) 914
BbsI GAAGAC 2 cut(s) 47, 318
BbvI GCAGC 1 cut(s) 102
BccI CCATC 2 cut(s) 552, 853
BciT130I CCWGG 1 cut(s) 334
BciVI GTATCC 1 cut(s) 787
BfaI CTAG 2 cut(s) 489, 684
BfmI CTRYAG 1 cut(s) 720
BfuI GTATCC 1 cut(s) 787
BglII AGATCT 1 cut(s) 671
BisI GCNGC 4 cut(s) 78, 113, 116, 435
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 4 cut(s) 79, 114, 117, 436
Bme1390I CCNGG 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 3 cut(s) 160, 679, 940
BpiI GAAGAC 2 cut(s) 47, 318
BpuEI CTTGAG 1 cut(s) 808
Bsa29I ATCGAT 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 318, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 709
BseBI CCWGG 1 cut(s) 334
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 318, 488
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 1 cut(s) 709
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 382, 465, 920
BshVI ATCGAT 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 286
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 3 cut(s) 382, 465, 920
Bsp143I GATC 3 cut(s) 671, 697, 799
BspACI CCGC 5 cut(s) 54, 75, 78, 113, 435
BspANI GGCC 3 cut(s) 382, 465, 920
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 2 cut(s) 705, 794
BsrDI GCAATG 1 cut(s) 709
BssECI CCNNGG 2 cut(s) 318, 488
BssMI GATC 3 cut(s) 671, 697, 799
BssNAI GTATAC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 488
Bst1107I GTATAC 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 4 cut(s) 443, 454, 580, 882
BstAPI GCANNNNNTGC 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 479
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 3 cut(s) 674, 700, 802
BstMBI GATC 3 cut(s) 671, 697, 799
BstMWI GCNNNNNNNGC 2 cut(s) 689, 711
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 186
BstPI GGTNACC 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 720
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 2 cut(s) 47, 318
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BstZ17I GTATAC 1 cut(s) 576
Bsu15I ATCGAT 1 cut(s) 204
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 3 cut(s) 382, 465, 920
BsuTUI ATCGAT 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 332
CviAII CATG 4 cut(s) 183, 197, 693, 962
DpnI GATC 3 cut(s) 673, 699, 801
DpnII GATC 3 cut(s) 671, 697, 799
Eam1104I CTCTTC 4 cut(s) 443, 454, 580, 882
EarI CTCTTC 4 cut(s) 443, 454, 580, 882
Eco130I CCWWGG 1 cut(s) 488
Eco91I GGTNACC 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 488
FaeI CATG 4 cut(s) 186, 200, 696, 965
FatI CATG 4 cut(s) 182, 196, 692, 961
FauI CCCGC 1 cut(s) 61
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 4 cut(s) 78, 113, 116, 435
Fsp4HI GCNGC 4 cut(s) 78, 113, 116, 435
FspBI CTAG 2 cut(s) 489, 684
GluI GCNGC 4 cut(s) 78, 113, 116, 435
HaeIII GGCC 3 cut(s) 382, 465, 920
Hin1II CATG 4 cut(s) 186, 200, 696, 965
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 82, 96, 314, 817
HphI GGTGA 3 cut(s) 415, 812, 826
Hpy166II GTNNAC 3 cut(s) 14, 241, 576
Hpy188I TCNGA 2 cut(s) 256, 319
Hpy188III TCNNGA 3 cut(s) 86, 646, 914
Hpy8I GTNNAC 3 cut(s) 14, 241, 576
HpyAV CCTTC 3 cut(s) 295, 447, 505
HpyCH4V TGCA 9 cut(s) 26, 151, 366, 620, 640, 692, 705, 714, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 711
Hsp92II CATG 4 cut(s) 186, 200, 696, 965
Kzo9I GATC 3 cut(s) 671, 697, 799
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 4 cut(s) 104, 319, 346, 587
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 3 cut(s) 160, 679, 940
MabI ACCWGGT 1 cut(s) 332
MaeI CTAG 2 cut(s) 489, 684
MaeIII GTNAC 2 cut(s) 403, 479
MalI GATC 3 cut(s) 673, 699, 801
MboI GATC 3 cut(s) 671, 697, 799
MboII GAAGA 8 cut(s) 52, 323, 383, 460, 471, 523, 597, 899
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 671
MluCI AATT 8 cut(s) 146, 245, 281, 474, 609, 665, 769, 942
MlyI GAGTC 3 cut(s) 76, 90, 308
MnlI CCTC 9 cut(s) 113, 133, 276, 313, 455, 561, 591, 720, 910
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 4 cut(s) 284, 810, 894, 967
MspA1I CMGCKG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 334
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 689, 711
NdeII GATC 3 cut(s) 671, 697, 799
NlaIII CATG 4 cut(s) 186, 200, 696, 965
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 403
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 186
PctI GAATGC 1 cut(s) 902
PfeI GAWTC 1 cut(s) 817
PkrI GCNGC 4 cut(s) 79, 114, 117, 436
PleI GAGTC 3 cut(s) 76, 90, 308
PpsI GAGTC 3 cut(s) 76, 90, 308
Psp6I CCWGG 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 479
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 671
SaqAI TTAA 4 cut(s) 284, 810, 894, 967
SatI GCNGC 4 cut(s) 78, 113, 116, 435
Sau3AI GATC 3 cut(s) 671, 697, 799
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 3 cut(s) 76, 90, 308
ScrFI CCNGG 1 cut(s) 334
SexAI ACCWGGT 1 cut(s) 332
SfaNI GCATC 3 cut(s) 160, 679, 940
SfcI CTRYAG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 787
SmoI CTYRAG 1 cut(s) 787
Sse9I AATT 8 cut(s) 146, 245, 281, 474, 609, 665, 769, 942
SsiI CCGC 5 cut(s) 54, 75, 78, 113, 435
SspI AATATT 1 cut(s) 158
SspMI CTAG 2 cut(s) 489, 684
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 488
TaqI TCGA 1 cut(s) 204
TasI AATT 8 cut(s) 146, 245, 281, 474, 609, 665, 769, 942
TauI GCSGC 3 cut(s) 80, 115, 437
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 4 cut(s) 284, 810, 894, 967
Tru9I TTAA 4 cut(s) 284, 810, 894, 967
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 185, 192, 523, 678
XceI RCATGY 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmaJI CCTAGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 575
XspI CTAG 2 cut(s) 489, 684
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.