Rmu_sc0011153.1_g000003

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011153.1
OG0000698
Physical Location & Seq
Forward (+)
7719 .. 8264
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011153.1_g000003.1.cds

Sequence Viewer

Length: 546 bp
atgaagacaatgaagcgagtcaaaggacaagaagaatgccgcatactcttgggcctatggaccgttttgcaacccccattgatccagattcttcattggatggaagtaggaagatgtggcaacaaaatatcaatgatgcatttttcaagcaaagaacacagtgtgcatcaatactcggctagatgggtgtatgaagtcgggattccttttcatgccgttgatagtgatagcttcaagaggtttgttaaagcggttggtcaatttggcccggattaccgacctccaagccaatatcaattaagggagccactattgaaggaagaggtagagagaactaaaagttcattgaagaagcaagaagaagagtgggctttgaatggttgctctattatgaccgatgcttggagcgaccggaaaagaagaagtatcatgaatttgtgtgtcaattgtgcggaaggcaaaacttttctttcttctaaggaagcatcggatgaggcacacaccgggacgtatatttttgaatatgtggacaagcgcattgaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

181

Amino Acids

21.09

Weight (kDa)

8.55

Isoelectric Point (pI)

48.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 40, 251, 452
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 433
AdeI CACNNNGTG 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 402
AgsI TTSAA 7 cut(s) 147, 235, 316, 349, 376, 521, 542
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 52, 265
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 3 cut(s) 52, 60, 266
AsuC2I CCSGG 2 cut(s) 269, 505
AvaII GGWCC 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 2 cut(s) 94, 177
BceAI ACGGC 1 cut(s) 200
BcnI CCSGG 2 cut(s) 269, 505
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 40
BlsI GCNGC 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 269, 505
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 3 cut(s) 52, 60, 266
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 2 cut(s) 269, 505
BmsI GCATC 4 cut(s) 126, 175, 388, 494
BpiI GAAGAC 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 269, 505
BsaWI WCCGGW 1 cut(s) 411
Bsc4I CCNNNNNNNGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 105, 496
BseLI CCNNNNNNNGG 1 cut(s) 402
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 2 cut(s) 54, 267
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 3 cut(s) 269, 412, 504
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 520
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 2 cut(s) 54, 267
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 3 cut(s) 40, 251, 452
BspANI GGCC 2 cut(s) 54, 267
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 1 cut(s) 76
BssMI GATC 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 64, 161
Bst6I CTCTTC 2 cut(s) 315, 357
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 105, 496
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 267, 503
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 54, 267
BtsCI GGATG 2 cut(s) 105, 496
BtsIMutI CAGTG 1 cut(s) 166
CciI TCATGA 1 cut(s) 429
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 3 cut(s) 52, 60, 266
CviAII CATG 2 cut(s) 212, 430
CviJI RGCY 7 cut(s) 54, 179, 231, 267, 288, 307, 371
CviKI_1 RGCY 7 cut(s) 54, 179, 231, 267, 288, 307, 371
DdeI CTNAG 1 cut(s) 477
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraIII CACNNNGTG 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 315, 357
EarI CTCTTC 2 cut(s) 315, 357
Eco47I GGWCC 1 cut(s) 60
EcoT22I ATGCAT 1 cut(s) 141
FaeI CATG 2 cut(s) 215, 433
FaiI YATR 8 cut(s) 44, 58, 192, 213, 392, 431, 513, 525
FaqI GGGAC 1 cut(s) 520
FatI CATG 2 cut(s) 211, 429
Fnu4HI GCNGC 1 cut(s) 40
FokI GGATG 2 cut(s) 112, 503
Fsp4HI GCNGC 1 cut(s) 40
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 536
GluI GCNGC 1 cut(s) 40
HaeIII GGCC 2 cut(s) 54, 267
HapII CCGG 3 cut(s) 269, 412, 504
HhaI GCGC 1 cut(s) 537
Hin1II CATG 2 cut(s) 215, 433
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HinfI GANTC 3 cut(s) 18, 88, 202
HpaII CCGG 3 cut(s) 269, 412, 504
Hpy166II GTNNAC 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 4 cut(s) 85, 199, 235, 430
Hpy8I GTNNAC 1 cut(s) 529
HpyAV CCTTC 2 cut(s) 310, 449
HpyCH4III ACNGT 2 cut(s) 64, 161
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 70, 139, 166
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 2 cut(s) 215, 433
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 304, 405
LpnPI CCDG 4 cut(s) 98, 282, 425, 517
LweI GCATC 4 cut(s) 126, 175, 388, 494
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 509
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MfeI CAATTG 1 cut(s) 445
MluCI AATT 4 cut(s) 260, 296, 433, 445
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 4 cut(s) 231, 291, 316, 487
Mph1103I ATGCAT 1 cut(s) 141
MseI TTAA 2 cut(s) 246, 299
MspI CCGG 3 cut(s) 269, 412, 504
MspR9I CCNGG 2 cut(s) 269, 505
MunI CAATTG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 269, 505
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 215, 433
NlaIV GGNNCC 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 141
PagI TCATGA 1 cut(s) 429
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 2 cut(s) 88, 202
PkrI GCNGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 3 cut(s) 52, 60, 266
SaqAI TTAA 2 cut(s) 246, 299
SatI GCNGC 1 cut(s) 40
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 3 cut(s) 52, 60, 266
SchI GAGTC 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 269, 505
SetI ASST 5 cut(s) 233, 242, 283, 327, 512
SfaNI GCATC 4 cut(s) 126, 175, 388, 494
SinI GGWCC 1 cut(s) 60
Sse9I AATT 4 cut(s) 260, 296, 433, 445
SsiI CCGC 3 cut(s) 40, 251, 452
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 267, 503
TaaI ACNGT 2 cut(s) 64, 161
TaiI ACGT 1 cut(s) 512
TaqII GACCGA 1 cut(s) 410
TasI AATT 4 cut(s) 260, 296, 433, 445
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 88, 202
Tru1I TTAA 2 cut(s) 246, 299
Tru9I TTAA 2 cut(s) 246, 299
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 7 cut(s) 17, 26, 83, 200, 207, 333, 446
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 1 cut(s) 433
XspI CTAG 1 cut(s) 180
Zsp2I ATGCAT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.