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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1674 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1434 |
| Acc16I | TGCGCA | 1 cut(s) | 1654 |
| AccI | GTMKAC | 2 cut(s) | 278, 298 |
| AciI | CCGC | 9 cut(s) | 5, 104, 698, 848, 1083, 1193, 1196, 1451, 1646 |
| AclWI | GGATC | 1 cut(s) | 1935 |
| AcoI | YGGCCR | 1 cut(s) | 1512 |
| AcsI | RAATTY | 2 cut(s) | 586, 679 |
| AdeI | CACNNNGTG | 1 cut(s) | 407 |
| AfeI | AGCGCT | 1 cut(s) | 1789 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 199, 315, 547, 648, 1863 |
| AhlI | ACTAGT | 1 cut(s) | 1142 |
| AjnI | CCWGG | 1 cut(s) | 647 |
| AluBI | AGCT | 7 cut(s) | 477, 1104, 1133, 1314, 1379, 1761, 1847 |
| AluI | AGCT | 7 cut(s) | 477, 1104, 1133, 1314, 1379, 1761, 1847 |
| AlwI | GGATC | 1 cut(s) | 1935 |
| Ama87I | CYCGRG | 1 cut(s) | 514 |
| Aor51HI | AGCGCT | 1 cut(s) | 1789 |
| AoxI | GGCC | 5 cut(s) | 797, 875, 1058, 1512, 1854 |
| ApoI | RAATTY | 2 cut(s) | 586, 679 |
| AseI | ATTAAT | 2 cut(s) | 1022, 1832 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AspLEI | GCGC | 2 cut(s) | 1655, 1790 |
| AspS9I | GGNCC | 2 cut(s) | 797, 1855 |
| AsuC2I | CCSGG | 2 cut(s) | 751, 1062 |
| AsuHPI | GGTGA | 5 cut(s) | 86, 832, 1210, 1591, 1892 |
| AvaI | CYCGRG | 1 cut(s) | 514 |
| BalI | TGGCCA | 1 cut(s) | 1514 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 211, 243 |
| BbsI | GAAGAC | 3 cut(s) | 219, 351, 708 |
| BccI | CCATC | 9 cut(s) | 40, 78, 423, 995, 1102, 1283, 1312, 1857, 1868 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 513, 547 |
| BciT130I | CCWGG | 1 cut(s) | 649 |
| BciVI | GTATCC | 1 cut(s) | 1734 |
| BcnI | CCSGG | 2 cut(s) | 751, 1062 |
| BcuI | ACTAGT | 1 cut(s) | 1142 |
| BfaI | CTAG | 5 cut(s) | 426, 948, 1071, 1143, 1839 |
| BfoI | RGCGCY | 1 cut(s) | 1791 |
| BfuI | GTATCC | 1 cut(s) | 1734 |
| BisI | GCNGC | 1 cut(s) | 1194 |
| BlsI | GCNGC | 1 cut(s) | 1195 |
| Bme1390I | CCNGG | 3 cut(s) | 649, 751, 1062 |
| BmeT110I | CYCGRG | 1 cut(s) | 514 |
| BmgT120I | GGNCC | 2 cut(s) | 797, 1855 |
| BmiI | GGNNCC | 2 cut(s) | 213, 552 |
| BmrFI | CCNGG | 3 cut(s) | 649, 751, 1062 |
| BmsI | GCATC | 6 cut(s) | 97, 421, 634, 740, 1640, 1816 |
| BpiI | GAAGAC | 3 cut(s) | 219, 351, 708 |
| BpmI | CTGGAG | 1 cut(s) | 670 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1641 |
| BpuMI | CCSGG | 2 cut(s) | 751, 1062 |
| BsaJI | CCNNGG | 2 cut(s) | 1515, 1858 |
| BsaWI | WCCGGW | 1 cut(s) | 1678 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 199, 315, 547, 648, 1863 |
| Bse3DI | GCAATG | 2 cut(s) | 42, 1439 |
| BseBI | CCWGG | 1 cut(s) | 649 |
| BseDI | CCNNGG | 2 cut(s) | 1515, 1858 |
| BseGI | GGATG | 9 cut(s) | 89, 112, 238, 1525, 1655, 1775, 1831, 1868, 1879 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 199, 315, 547, 648, 1863 |
| BseMI | GCAATG | 2 cut(s) | 42, 1439 |
| BseRI | GAGGAG | 2 cut(s) | 110, 1361 |
| Bsh1285I | CGRYCG | 1 cut(s) | 658 |
| BshFI | GGCC | 5 cut(s) | 799, 877, 1060, 1514, 1856 |
| BsiEI | CGRYCG | 1 cut(s) | 658 |
| BsiHKCI | CYCGRG | 1 cut(s) | 514 |
| BsiSI | CCGG | 3 cut(s) | 750, 1061, 1679 |
| BslFI | GGGAC | 1 cut(s) | 766 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 199, 315, 547, 648, 1863 |
| BsmFI | GGGAC | 1 cut(s) | 766 |
| BsmI | GAATGC | 2 cut(s) | 262, 1361 |
| BsnI | GGCC | 5 cut(s) | 799, 877, 1060, 1514, 1856 |
| BsoBI | CYCGRG | 1 cut(s) | 514 |
| Bsp143I | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| Bsp19I | CCATGG | 1 cut(s) | 1515 |
| BspACI | CCGC | 9 cut(s) | 5, 104, 698, 848, 1083, 1193, 1196, 1451, 1646 |
| BspANI | GGCC | 5 cut(s) | 799, 877, 1060, 1514, 1856 |
| BspHI | TCATGA | 1 cut(s) | 675 |
| BspLI | GGNNCC | 2 cut(s) | 213, 552 |
| BspPI | GGATC | 1 cut(s) | 1935 |
| BsrDI | GCAATG | 2 cut(s) | 42, 1439 |
| BssECI | CCNNGG | 2 cut(s) | 1515, 1858 |
| BssMI | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| BssT1I | CCWWGG | 2 cut(s) | 1515, 1858 |
| Bst2UI | CCWGG | 1 cut(s) | 649 |
| Bst6I | CTCTTC | 5 cut(s) | 261, 489, 561, 603, 866 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1835 |
| BstC8I | GCNNGC | 2 cut(s) | 1166, 1170 |
| BstDEI | CTNAG | 3 cut(s) | 723, 1334, 1641 |
| BstDSI | CCRYGG | 1 cut(s) | 1515 |
| BstEII | GGTNACC | 2 cut(s) | 518, 1454 |
| BstF5I | GGATG | 9 cut(s) | 89, 112, 238, 1525, 1655, 1775, 1831, 1868, 1879 |
| BstH2I | RGCGCY | 1 cut(s) | 1791 |
| BstHHI | GCGC | 2 cut(s) | 1655, 1790 |
| BstKTI | GATC | 6 cut(s) | 56, 658, 1372, 1426, 1903, 1930 |
| BstMBI | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| BstMCI | CGRYCG | 1 cut(s) | 658 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1214, 1652, 1835, 1844, 1853 |
| BstNI | CCWGG | 1 cut(s) | 649 |
| BstNSI | RCATGY | 1 cut(s) | 1172 |
| BstPI | GGTNACC | 2 cut(s) | 518, 1454 |
| BstSCI | CCNGG | 3 cut(s) | 647, 749, 1060 |
| BstV2I | GAAGAC | 3 cut(s) | 219, 351, 708 |
| BsuI | GTATCC | 1 cut(s) | 1734 |
| BsuRI | GGCC | 5 cut(s) | 799, 877, 1060, 1514, 1856 |
| BtgI | CCRYGG | 1 cut(s) | 1515 |
| BtsCI | GGATG | 9 cut(s) | 89, 112, 238, 1525, 1655, 1775, 1831, 1868, 1879 |
| Cac8I | GCNNGC | 2 cut(s) | 1166, 1170 |
| CciI | TCATGA | 1 cut(s) | 675 |
| CfoI | GCGC | 2 cut(s) | 1655, 1790 |
| Cfr13I | GGNCC | 2 cut(s) | 797, 1855 |
| CviAII | CATG | 8 cut(s) | 208, 302, 404, 458, 676, 897, 1169, 1516 |
| DdeI | CTNAG | 3 cut(s) | 723, 1334, 1641 |
| DpnI | GATC | 6 cut(s) | 55, 657, 1371, 1425, 1902, 1929 |
| DpnII | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| DraIII | CACNNNGTG | 1 cut(s) | 407 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1434 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1434 |
| EaeI | YGGCCR | 1 cut(s) | 1512 |
| Eam1104I | CTCTTC | 5 cut(s) | 261, 489, 561, 603, 866 |
| EarI | CTCTTC | 5 cut(s) | 261, 489, 561, 603, 866 |
| EciI | GGCGGA | 2 cut(s) | 119, 863 |
| Eco130I | CCWWGG | 2 cut(s) | 1515, 1858 |
| Eco47III | AGCGCT | 1 cut(s) | 1789 |
| Eco88I | CYCGRG | 1 cut(s) | 514 |
| Eco91I | GGTNACC | 2 cut(s) | 518, 1454 |
| EcoO65I | GGTNACC | 2 cut(s) | 518, 1454 |
| EcoRII | CCWGG | 1 cut(s) | 647 |
| EcoT14I | CCWWGG | 2 cut(s) | 1515, 1858 |
| EcoT22I | ATGCAT | 1 cut(s) | 1831 |
| ErhI | CCWWGG | 2 cut(s) | 1515, 1858 |
| FaeI | CATG | 8 cut(s) | 211, 305, 407, 461, 679, 900, 1172, 1519 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 315, 347 |
| FaqI | GGGAC | 1 cut(s) | 766 |
| FatI | CATG | 8 cut(s) | 207, 301, 403, 457, 675, 896, 1168, 1515 |
| FauI | CCCGC | 2 cut(s) | 1444, 1639 |
| FauNDI | CATATG | 1 cut(s) | 1480 |
| FblI | GTMKAC | 2 cut(s) | 278, 298 |
| Fnu4HI | GCNGC | 1 cut(s) | 1194 |
| FokI | GGATG | 9 cut(s) | 96, 119, 245, 1532, 1662, 1782, 1838, 1875, 1886 |
| Fsp4HI | GCNGC | 1 cut(s) | 1194 |
| FspAI | RTGCGCAY | 1 cut(s) | 1654 |
| FspBI | CTAG | 5 cut(s) | 426, 948, 1071, 1143, 1839 |
| FspI | TGCGCA | 1 cut(s) | 1654 |
| GlaI | GCGC | 2 cut(s) | 1654, 1789 |
| GluI | GCNGC | 1 cut(s) | 1194 |
| GsuI | CTGGAG | 1 cut(s) | 670 |
| HaeII | RGCGCY | 1 cut(s) | 1791 |
| HaeIII | GGCC | 5 cut(s) | 799, 877, 1060, 1514, 1856 |
| HapII | CCGG | 3 cut(s) | 750, 1061, 1679 |
| HhaI | GCGC | 2 cut(s) | 1655, 1790 |
| Hin1II | CATG | 8 cut(s) | 211, 305, 407, 461, 679, 900, 1172, 1519 |
| Hin6I | GCGC | 2 cut(s) | 1653, 1788 |
| HinP1I | GCGC | 2 cut(s) | 1653, 1788 |
| HincII | GTYRAC | 1 cut(s) | 1035 |
| HindII | GTYRAC | 1 cut(s) | 1035 |
| HindIII | AAGCTT | 1 cut(s) | 1102 |
| HinfI | GANTC | 5 cut(s) | 448, 916, 951, 1065, 1895 |
| HpaII | CCGG | 3 cut(s) | 750, 1061, 1679 |
| HphI | GGTGA | 5 cut(s) | 86, 832, 1210, 1591, 1892 |
| Hpy166II | GTNNAC | 5 cut(s) | 279, 299, 615, 775, 1035 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 232, 660, 736, 1900 |
| Hpy188III | TCNNGA | 8 cut(s) | 332, 481, 676, 1373, 1462, 1553, 1767, 1925 |
| Hpy8I | GTNNAC | 5 cut(s) | 279, 299, 615, 775, 1035 |
| HpyAV | CCTTC | 4 cut(s) | 329, 556, 964, 1183 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1214, 1652, 1835, 1844, 1853 |
| HpyF3I | CTNAG | 3 cut(s) | 723, 1334, 1641 |
| Hsp92II | CATG | 8 cut(s) | 211, 305, 407, 461, 679, 900, 1172, 1519 |
| HspAI | GCGC | 2 cut(s) | 1653, 1788 |
| Kzo9I | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| LmnI | GCTCC | 4 cut(s) | 217, 550, 651, 1785 |
| LpnPI | CCDG | 7 cut(s) | 634, 661, 763, 1074, 1692, 1752, 1910 |
| LweI | GCATC | 6 cut(s) | 97, 421, 634, 740, 1640, 1816 |
| MaeI | CTAG | 5 cut(s) | 426, 948, 1071, 1143, 1839 |
| MaeIII | GTNAC | 5 cut(s) | 518, 820, 1066, 1454, 1579 |
| MalI | GATC | 6 cut(s) | 55, 657, 1371, 1425, 1902, 1929 |
| MboI | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| MlsI | TGGCCA | 1 cut(s) | 1514 |
| MluNI | TGGCCA | 1 cut(s) | 1514 |
| MlyI | GAGTC | 2 cut(s) | 1074, 1904 |
| MmeI | TCCRAC | 1 cut(s) | 21 |
| Mox20I | TGGCCA | 1 cut(s) | 1514 |
| Mph1103I | ATGCAT | 1 cut(s) | 1831 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MscI | TGGCCA | 1 cut(s) | 1514 |
| MseI | TTAA | 6 cut(s) | 59, 545, 1022, 1235, 1353, 1832 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1768 |
| Msp20I | TGGCCA | 1 cut(s) | 1514 |
| MspI | CCGG | 3 cut(s) | 750, 1061, 1679 |
| MspR9I | CCNGG | 3 cut(s) | 649, 751, 1062 |
| Mva1269I | GAATGC | 2 cut(s) | 262, 1361 |
| MvaI | CCWGG | 1 cut(s) | 649 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1214, 1652, 1835, 1844, 1853 |
| NciI | CCSGG | 2 cut(s) | 751, 1062 |
| NcoI | CCATGG | 1 cut(s) | 1515 |
| NdeI | CATATG | 1 cut(s) | 1480 |
| NdeII | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| NlaIII | CATG | 8 cut(s) | 211, 305, 407, 461, 679, 900, 1172, 1519 |
| NlaIV | GGNNCC | 2 cut(s) | 213, 552 |
| NmeAIII | GCCGAG | 1 cut(s) | 469 |
| NmuCI | GTSAC | 3 cut(s) | 820, 1066, 1579 |
| NsbI | TGCGCA | 1 cut(s) | 1654 |
| NsiI | ATGCAT | 1 cut(s) | 1831 |
| NspI | RCATGY | 1 cut(s) | 1172 |
| PaeI | GCATGC | 1 cut(s) | 1172 |
| PagI | TCATGA | 1 cut(s) | 675 |
| PctI | GAATGC | 2 cut(s) | 262, 1361 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 3 cut(s) | 448, 916, 951 |
| PkrI | GCNGC | 1 cut(s) | 1195 |
| Ple19I | CGATCG | 1 cut(s) | 658 |
| PleI | GAGTC | 2 cut(s) | 1073, 1903 |
| PpsI | GAGTC | 2 cut(s) | 1073, 1903 |
| PshBI | ATTAAT | 2 cut(s) | 1022, 1832 |
| PsiI | TTATAA | 1 cut(s) | 1674 |
| Psp6I | CCWGG | 1 cut(s) | 647 |
| PspEI | GGTNACC | 2 cut(s) | 518, 1454 |
| PspGI | CCWGG | 1 cut(s) | 647 |
| PspN4I | GGNNCC | 2 cut(s) | 213, 552 |
| PspPI | GGNCC | 2 cut(s) | 797, 1855 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1457, 1489 |
| PvuI | CGATCG | 1 cut(s) | 658 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1768 |
| SaqAI | TTAA | 6 cut(s) | 59, 545, 1022, 1235, 1353, 1832 |
| SatI | GCNGC | 1 cut(s) | 1194 |
| Sau3AI | GATC | 6 cut(s) | 53, 655, 1369, 1423, 1900, 1927 |
| Sau96I | GGNCC | 2 cut(s) | 797, 1855 |
| SchI | GAGTC | 2 cut(s) | 1074, 1904 |
| ScrFI | CCNGG | 3 cut(s) | 649, 751, 1062 |
| SfaNI | GCATC | 6 cut(s) | 97, 421, 634, 740, 1640, 1816 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1768 |
| SpeI | ACTAGT | 1 cut(s) | 1142 |
| SphI | GCATGC | 1 cut(s) | 1172 |
| SsiI | CCGC | 9 cut(s) | 5, 104, 698, 848, 1083, 1193, 1196, 1451, 1646 |
| SspI | AATATT | 1 cut(s) | 1696 |
| SspMI | CTAG | 5 cut(s) | 426, 948, 1071, 1143, 1839 |
| StyD4I | CCNGG | 3 cut(s) | 647, 749, 1060 |
| StyI | CCWWGG | 2 cut(s) | 1515, 1858 |
| TaqI | TCGA | 5 cut(s) | 23, 172, 492, 1426, 1930 |
| TaqII | GACCGA | 1 cut(s) | 656 |
| TauI | GCSGC | 1 cut(s) | 1196 |
| TfiI | GAWTC | 3 cut(s) | 448, 916, 951 |
| Tru1I | TTAA | 6 cut(s) | 59, 545, 1022, 1235, 1353, 1832 |
| Tru9I | TTAA | 6 cut(s) | 59, 545, 1022, 1235, 1353, 1832 |
| TseFI | GTSAC | 3 cut(s) | 820, 1066, 1579 |
| Tsp45I | GTSAC | 3 cut(s) | 820, 1066, 1579 |
| TspGWI | ACGGA | 1 cut(s) | 839 |
| VspI | ATTAAT | 2 cut(s) | 1022, 1832 |
| XapI | RAATTY | 2 cut(s) | 586, 679 |
| XceI | RCATGY | 1 cut(s) | 1172 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 885 |
| XmiI | GTMKAC | 2 cut(s) | 278, 298 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 5 cut(s) | 426, 948, 1071, 1143, 1839 |
| Zsp2I | ATGCAT | 1 cut(s) | 1831 |