Rmu_sc0011153.1_g000002

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011153.1
Physical Location & Seq
Forward (+)
6728 .. 7648
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011153.1_g000002.1.cds

Sequence Viewer

Length: 402 bp
atgcgtcttggggtggccggacggcgacgaattcgccggagaagggaagagcagcgacggaagaagaaaaagaaaatgggagggggtgactcggttttggttactgaatactgtttttgcttatttagggaaatggcgggtactacatcttcctcggcatctaatgcaatgtcggagatgagttcatcattgaagcgtggttcgggtgatattggatgggaatatgcggagttggcggatgcttcaaacttggataggtttaagtgtaagttgtgtggtaaattagtcagtggtgggatatatcgaatgaagcaacatattgcccacataaagggaaatgtggctccttgtaaaaagtcttcggatgaggataaagccaaatgcaagaatgctattgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

133

Amino Acids

14.84

Weight (kDa)

9.91

Isoelectric Point (pI)

72.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 137, 227, 236
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 2 cut(s) 43, 331
AgsI TTSAA 3 cut(s) 193, 246, 398
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 98, 218
BarI GAAGNNNNNNTAC 4 cut(s) 133, 165, 343, 375
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 210
BceAI ACGGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 345
BmsI GCATC 2 cut(s) 167, 229
BpiI GAAGAC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 331
Bse3DI GCAATG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 221, 244, 370
BseLI CCNNNNNNNGG 2 cut(s) 43, 331
BseMI GCAATG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 18, 37
BslI CCNNNNNNNGG 2 cut(s) 43, 331
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 17
BspACI CCGC 3 cut(s) 137, 227, 236
BspANI GGCC 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 164
BstF5I GGATG 3 cut(s) 221, 244, 370
BstMWI GCNNNNNNNGC 2 cut(s) 164, 233
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 17
BtsCI GGATG 3 cut(s) 221, 244, 370
BtsIMutI CAGTG 1 cut(s) 295
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 3 cut(s) 17, 344, 377
CviKI_1 RGCY 3 cut(s) 17, 344, 377
CviQI GTAC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 15
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 30
FaiI YATR 4 cut(s) 225, 301, 318, 329
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 3 cut(s) 228, 251, 377
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HaeIII GGCC 1 cut(s) 17
HapII CCGG 2 cut(s) 18, 37
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 18, 37
HphI GGTGA 2 cut(s) 98, 218
Hpy188I TCNGA 2 cut(s) 175, 364
Hpy99I CGWCG 2 cut(s) 30, 60
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 167, 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 233
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 2 cut(s) 31, 50
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 2 cut(s) 167, 229
MaeIII GTNAC 2 cut(s) 86, 100
MboII GAAGA 5 cut(s) 59, 73, 76, 141, 351
MluCI AATT 2 cut(s) 30, 281
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 3 cut(s) 74, 163, 361
MseI TTAA 1 cut(s) 261
MspI CCGG 2 cut(s) 18, 37
Mva1269I GAATGC 1 cut(s) 394
MwoI GCNNNNNNNGC 2 cut(s) 164, 233
NlaIV GGNNCC 1 cut(s) 345
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 42
PctI GAATGC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 345
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 1 cut(s) 53
SchI GAGTC 1 cut(s) 83
SetI ASST 1 cut(s) 260
SfaNI GCATC 2 cut(s) 167, 229
Sse9I AATT 2 cut(s) 30, 281
SsiI CCGC 3 cut(s) 137, 227, 236
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 30, 281
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 2 cut(s) 174, 323
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 1 cut(s) 295
XapI RAATTY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.