RchiOBHm_Chr5g0003001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000698
Physical Location & Seq
Forward (+)
1773363 .. 1773814
452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28433

Sequence Viewer

Length: 276 bp
ATGAAAGAGAAGAATGTAGATGTATTACTAGCATGTGAAGCTACTATGACCCAAGGATGGATTGTGGATGGTGGTGATGAAGATGTAGATTCCGATCTTACTAGTGAAGTAGTTGGAGAGGGATCGGGATTGGGAGTGGACAGTAGCTTAGAGCCTAGGAGAAGTAGTAGAATTCAAGAAATTAGAGAACTTCATGAGGAGGATTTTGTATCGGATGAAGAGGAAGAAGATGAGATGACTTTTGAGTTTGAGTCCGATGAGGAGGGAGTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

4.05

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 176
AhlI ACTAGT 1 cut(s) 101
AluBI AGCT 2 cut(s) 41, 147
AluI AGCT 2 cut(s) 41, 147
AlwI GGATC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 171
AspA2I CCTAGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 86
AvrII CCTAGG 1 cut(s) 155
BccI CCATC 2 cut(s) 51, 62
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 3 cut(s) 29, 102, 156
BfmI CTRYAG 1 cut(s) 272
BlnI CCTAGG 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 52, 155
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 52, 155
BseGI GGATG 3 cut(s) 62, 73, 220
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 212, 275
BslI CCNNNNNNNGG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 94, 122
BspHI TCATGA 1 cut(s) 193
BspPI GGATC 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 52, 155
BssMI GATC 2 cut(s) 94, 122
BssT1I CCWWGG 2 cut(s) 52, 155
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 148
BstF5I GGATG 3 cut(s) 62, 73, 220
BstKTI GATC 2 cut(s) 97, 125
BstMBI GATC 2 cut(s) 94, 122
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 272
BtsCI GGATG 3 cut(s) 62, 73, 220
CciI TCATGA 1 cut(s) 193
Csp6I GTAC 1 cut(s) 269
CviAII CATG 2 cut(s) 33, 194
CviJI RGCY 3 cut(s) 41, 147, 154
CviKI_1 RGCY 3 cut(s) 41, 147, 154
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 148
DpnI GATC 2 cut(s) 96, 124
DpnII GATC 2 cut(s) 94, 122
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 52, 155
EcoRI GAATTC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 52, 155
ErhI CCWWGG 2 cut(s) 52, 155
FaeI CATG 2 cut(s) 36, 197
FaiI YATR 4 cut(s) 34, 47, 195, 274
FatI CATG 2 cut(s) 32, 193
FokI GGATG 3 cut(s) 69, 80, 227
FspBI CTAG 3 cut(s) 29, 102, 156
Hin1II CATG 2 cut(s) 36, 197
HinfI GANTC 2 cut(s) 89, 251
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 94, 214, 256
Hpy188III TCNNGA 3 cut(s) 126, 176, 194
Hpy8I GTNNAC 1 cut(s) 139
HpyCH4III ACNGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 148
Hsp92II CATG 2 cut(s) 36, 197
Kzo9I GATC 2 cut(s) 94, 122
MaeI CTAG 3 cut(s) 29, 102, 156
MalI GATC 2 cut(s) 96, 124
MboI GATC 2 cut(s) 94, 122
MboII GAAGA 5 cut(s) 22, 92, 230, 236, 239
MluCI AATT 2 cut(s) 171, 180
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 6 cut(s) 112, 190, 193, 214, 253, 256
MwoI GCNNNNNNNGC 1 cut(s) 38
NdeII GATC 2 cut(s) 94, 122
NlaIII CATG 2 cut(s) 36, 197
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 193
PfeI GAWTC 1 cut(s) 89
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
Sau3AI GATC 2 cut(s) 94, 122
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 1 cut(s) 260
SetI ASST 2 cut(s) 43, 149
SfcI CTRYAG 1 cut(s) 272
SgeI CNNG 8 cut(s) 41, 45, 65, 114, 138, 168, 188, 206
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 2 cut(s) 171, 180
SspMI CTAG 3 cut(s) 29, 102, 156
StyI CCWWGG 2 cut(s) 52, 155
TaaI ACNGT 1 cut(s) 143
TasI AATT 2 cut(s) 171, 180
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 17, 93, 182, 231
XapI RAATTY 1 cut(s) 171
XceI RCATGY 1 cut(s) 36
XmaJI CCTAGG 1 cut(s) 155
XspI CTAG 3 cut(s) 29, 102, 156
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.