FvH4_3g29751

source UniProtKB

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
22822358 .. 22822715
358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29751.t1

Sequence Viewer

Length: 261 bp
ATGGCACAAGGATTGATTGTTGAGGATGGTGATAAAGATGTTGATTCAGATCTTATCAATGACATGGTTGGAGATGAACTGGGAGTTGATAGTAGCGCTCCACCTAGGAGAAGTGCTTGGATCCAAGAAGTAAGAGAACTTGGTGAAGAACTTGAAGAATCGGATGAAGAAGAAGAGGAGGGTGATGAGATGGATTTTGAGTTTGAGTCCGACACCGAAGGAGTAGTAGAGGGATATGGAGAAGAAGAATATAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.66

Weight (kDa)

4.05

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 115, 128
AfeI AGCGCT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 155
AlwI GGATC 2 cut(s) 115, 128
Aor51HI AGCGCT 1 cut(s) 97
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 41, 155, 194
AvrII CCTAGG 1 cut(s) 104
BamHI GGATCC 1 cut(s) 120
BccI CCATC 2 cut(s) 20, 184
BfaI CTAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 99
BglII AGATCT 1 cut(s) 49
BlnI CCTAGG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 122
BmrI ACTGGG 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 2 cut(s) 31, 169
BseJI GATNNNNATC 1 cut(s) 48
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 191
Bsp143I GATC 2 cut(s) 49, 120
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 2 cut(s) 115, 128
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 2 cut(s) 49, 120
BssT1I CCWWGG 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 168
BstF5I GGATG 2 cut(s) 31, 169
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 2 cut(s) 52, 123
BstMBI GATC 2 cut(s) 49, 120
BstX2I RGATCY 2 cut(s) 49, 120
BstYI RGATCY 2 cut(s) 49, 120
BtsCI GGATG 2 cut(s) 31, 169
CfoI GCGC 1 cut(s) 98
CviAII CATG 1 cut(s) 64
DpnI GATC 2 cut(s) 51, 122
DpnII GATC 2 cut(s) 49, 120
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 237, 252
FatI CATG 1 cut(s) 63
FokI GGATG 2 cut(s) 38, 176
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 97
HaeII RGCGCY 1 cut(s) 99
HhaI GCGC 1 cut(s) 98
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 3 cut(s) 44, 158, 206
HphI GGTGA 3 cut(s) 41, 155, 194
Hpy188I TCNGA 3 cut(s) 49, 163, 211
HpyAV CCTTC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 2 cut(s) 49, 120
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 1 cut(s) 65
MaeI CTAG 1 cut(s) 105
MalI GATC 2 cut(s) 51, 122
MboI GATC 2 cut(s) 49, 120
MboII GAAGA 7 cut(s) 158, 167, 179, 182, 185, 254, 257
MflI RGATCY 2 cut(s) 49, 120
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 49, 234
MnlI CCTC 4 cut(s) 16, 169, 172, 223
NdeII GATC 2 cut(s) 49, 120
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 44, 158
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 122
PsuI RGATCY 2 cut(s) 49, 120
Sau3AI GATC 2 cut(s) 49, 120
SchI GAGTC 1 cut(s) 215
SetI ASST 1 cut(s) 106
SgeI CNNG 8 cut(s) 20, 76, 92, 117, 129, 137, 152, 164
SspMI CTAG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 104
TfiI GAWTC 2 cut(s) 44, 158
TspDTI ATGAA 2 cut(s) 90, 180
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.