FvH4_2g24751

source UniProtKB

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
20105295 .. 20107938
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24751.t1

Sequence Viewer

Length: 318 bp
ATGGCTGGTACTACATCTTCCGGAGGTTCAAATCCAATGACAGAGATAGATACGTCTTTGAAGCGTAATTATGAAGATGTTGAATGGGAATTTGGGGCATTGGTGAACCCTTCAAATGTAGACAAGGTGAAGTGCAAGTTATGTGGGAAAGTACTTAGTGGTGGAATATACCGGCTTAAGCAACATATTGCTCACATAAAGGGGAATGTAGCTCCTTGTAATAAGTCTTCGGATGAGGATAAGAAGAAGTATATTTGCTATGCACTTATGGAAGTTGTAAACTTGTATGCTTGGATTGCTTGCGCTATTTACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

106

Amino Acids

11.61

Weight (kDa)

8.26

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 20
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 2 cut(s) 10, 153
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 30, 61, 83, 114
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 20
ApoI RAATTY 1 cut(s) 89
AspLEI GCGC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 115, 139
BarI GAAGNNNNNNTAC 3 cut(s) 33, 211, 243
BbsI GAAGAC 1 cut(s) 219
BfrI CTTAAG 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 20
BseGI GGATG 1 cut(s) 238
BsiSI CCGG 2 cut(s) 21, 172
Bsp13I TCCGGA 1 cut(s) 20
BspEI TCCGGA 1 cut(s) 20
BspTI CTTAAG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 305
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 1 cut(s) 305
Cfr10I RCCGGY 1 cut(s) 171
Csp6I GTAC 2 cut(s) 9, 152
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviJI RGCY 3 cut(s) 5, 175, 212
CviKI_1 RGCY 3 cut(s) 5, 175, 212
CviQI GTAC 2 cut(s) 9, 152
DdeI CTNAG 1 cut(s) 155
FaiI YATR 9 cut(s) 72, 142, 169, 186, 197, 252, 261, 269, 288
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 245
GlaI GCGC 1 cut(s) 304
HapII CCGG 2 cut(s) 21, 172
HhaI GCGC 1 cut(s) 305
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HpaII CCGG 2 cut(s) 21, 172
HphI GGTGA 2 cut(s) 115, 139
Hpy166II GTNNAC 3 cut(s) 106, 121, 280
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 3 cut(s) 106, 121, 280
HpyAV CCTTC 1 cut(s) 120
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 135, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 53
HspAI GCGC 1 cut(s) 303
Kpn2I TCCGGA 1 cut(s) 20
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 2 cut(s) 34, 185
MaeII ACGT 1 cut(s) 53
MboII GAAGA 4 cut(s) 9, 86, 219, 256
MluCI AATT 2 cut(s) 67, 89
MnlI CCTC 2 cut(s) 17, 229
MroI TCCGGA 1 cut(s) 20
MseI TTAA 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 21, 172
MwoI GCNNNNNNNGC 1 cut(s) 296
RsaI GTAC 2 cut(s) 10, 153
RsaNI GTAC 2 cut(s) 9, 152
SaqAI TTAA 1 cut(s) 177
ScaI AGTACT 1 cut(s) 153
SetI ASST 4 cut(s) 28, 56, 129, 214
SgeI CNNG 9 cut(s) 18, 33, 136, 148, 184, 228, 295, 303, 312
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 67, 89
TaiI ACGT 1 cut(s) 56
TasI AATT 2 cut(s) 67, 89
TatI WGTACW 1 cut(s) 151
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 87
Vha464I CTTAAG 1 cut(s) 176
XapI RAATTY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.