Rmu_sc0002226.1_g000026

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002226.1
OG0000698
Physical Location & Seq
Reverse (-)
113678 .. 113989
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002226.1_g000026.1.cds

Sequence Viewer

Length: 312 bp
atggagggtactgcatcttcctcggcatctaatgcaatgccggagatggatagatcattgaagcgtggttcgggtgatattggatgggaatatgcggagttggcggatgcttcaaacttggacaggttgaagtgtaagttgtgtgggaaattagtgagtggtgggatatatcgaatgatgcctcatattgcccacatcaagggaaaagtggctccttgtaaaaagtcttcggatgaggataaagccaaatgcaagattgctattgaagaggcaaagtctaagaagaaacaaaagagtagacatgaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

9.34

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AciI CCGC 2 cut(s) 95, 104
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 4 cut(s) 61, 114, 130, 266
AsuHPI GGTGA 1 cut(s) 86
BarI GAAGNNNNNNTAC 3 cut(s) 33, 211, 243
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 2 cut(s) 40, 78
BcgI CGANNNNNNTGC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 213
BmsI GCATC 4 cut(s) 23, 35, 97, 168
BpiI GAAGAC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 3 cut(s) 89, 112, 238
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 199
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 2 cut(s) 95, 104
BspLI GGNNCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 261
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 89, 112, 238
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 32, 101
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 3 cut(s) 89, 112, 238
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 302
CviJI RGCY 2 cut(s) 212, 245
CviKI_1 RGCY 2 cut(s) 212, 245
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EciI GGCGGA 1 cut(s) 119
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 93, 169, 186, 303, 310
FatI CATG 1 cut(s) 301
FblI GTMKAC 1 cut(s) 298
FokI GGATG 3 cut(s) 96, 119, 245
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 305
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 14, 35, 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 101
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 2 cut(s) 54, 109
LweI GCATC 4 cut(s) 23, 35, 97, 168
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 4 cut(s) 9, 219, 278, 295
MluCI AATT 1 cut(s) 149
MnlI CCTC 4 cut(s) 31, 192, 229, 262
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 32, 101
NdeII GATC 1 cut(s) 53
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 213
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
Sau3AI GATC 1 cut(s) 53
SetI ASST 1 cut(s) 128
SfaNI GCATC 4 cut(s) 23, 35, 97, 168
SgeI CNNG 9 cut(s) 34, 53, 77, 84, 130, 136, 211, 228, 265
Sse9I AATT 1 cut(s) 149
SsiI CCGC 2 cut(s) 95, 104
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.