FvH4_7g00215

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000698
Physical Location & Seq
Reverse (-)
841388 .. 841618
231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00215.t1

Sequence Viewer

Length: 231 bp
ATGGCTGGTAGTAGTCGTACTACATCTTCCGGAGGGTCAAATGCAATGTCAGAGATAGATGTGTCTTTGAAGCGTAATTCCGAAGATGTTGGATGGGAATATGGGGCATTGGTGAACCCTTCAAATTTAGACAAAGTGAAGTGCAAGTTATGTGGGAAAGTATATGCTATTTTGAAGTTGTTGTGTGGTGATTATGATGTGAATTCAAGAGTTGATGGTGCTTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

77

Amino Acids

8.07

Weight (kDa)

6.11

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 29
AcsI RAATTY 2 cut(s) 124, 202
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 5 cut(s) 70, 123, 175, 207, 226
Aor13HI TCCGGA 1 cut(s) 29
ApoI RAATTY 2 cut(s) 124, 202
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AsuHPI GGTGA 2 cut(s) 124, 200
BarI GAAGNNNNNNTAC 2 cut(s) 10, 42
BccI CCATC 2 cut(s) 87, 209
BsaWI WCCGGW 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 29
BseGI GGATG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 29
BspEI TCCGGA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 18
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
CviQI GTAC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 202
FaiI YATR 5 cut(s) 102, 151, 163, 165, 195
FokI GGATG 1 cut(s) 105
HapII CCGG 1 cut(s) 30
HpaII CCGG 1 cut(s) 30
HphI GGTGA 2 cut(s) 124, 200
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 52, 82
Hpy188III TCNNGA 2 cut(s) 30, 207
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 44, 144
Kpn2I TCCGGA 1 cut(s) 29
LpnPI CCDG 1 cut(s) 43
MboII GAAGA 2 cut(s) 18, 95
MluCI AATT 4 cut(s) 76, 124, 202, 226
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 1 cut(s) 26
MroI TCCGGA 1 cut(s) 29
MspI CCGG 1 cut(s) 30
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SgeI CNNG 4 cut(s) 18, 42, 157, 219
Sse9I AATT 4 cut(s) 76, 124, 202, 226
TasI AATT 4 cut(s) 76, 124, 202, 226
XapI RAATTY 2 cut(s) 124, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.