Rw3G023080

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000698
Physical Location & Seq
Reverse (-)
28717053 .. 28719417
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023080.1

Sequence Viewer

Length: 537 bp
ATGGCAGAAAATCTGATAATGGCGGGCACTACATCATCCTCGACATCTAATGCAATGTCTTCAATGGATAGATCATTAAAGCGTGGTTCGGGTGATATTGGATGGGAGTATGTGGAGTTAGCGGATGCTTCAAACTTGGATAGGTTGAAGTGTAAGTTGTGTGGGAAATTGGTGAGTGGTGGAATATATCGAATGAAGCAACATATTGCCCACATCAAGGGAAACGTGGCTCCTTGTAAAAAGTCTTCGGATGAGGATATAGCCAAATGCAAGAATGCTATTGAAGAGGCAAAGTCTAAGAAGAAACAAAAGAGTATGCATGAAGTAGAAGTGAGGCAAGAAGTCATTCTTGAAGGAGATGAAGACAATGAAGCGAGTCAAGGGACAACAAGAAAGCCGCATACCCTTGGGCTTATGGACCGTTTTGCATCCCCCATTGATCCGGATTCTTCAATGGAAGGAAGTAGGAAGATGAGGCAACAAAATATCAATGATGCACTTTTCAAGCAAAGAACACAGTGTGCAAAGAACACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

178

Amino Acids

19.68

Weight (kDa)

8.77

Isoelectric Point (pI)

46.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 442
AciI CCGC 3 cut(s) 23, 122, 398
AclWI GGATC 1 cut(s) 434
AdeI CACNNNGTG 1 cut(s) 521
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 7 cut(s) 63, 132, 148, 284, 353, 453, 505
AlwI GGATC 1 cut(s) 434
Aor13HI TCCGGA 1 cut(s) 442
Asp700I GAANNNNTTC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 104, 184
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BbsI GAAGAC 3 cut(s) 51, 237, 369
BccI CCATC 1 cut(s) 96
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 3 cut(s) 115, 437, 484
BpiI GAAGAC 3 cut(s) 51, 237, 369
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 60
BseAI TCCGGA 1 cut(s) 442
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 5 cut(s) 35, 107, 130, 256, 428
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 443
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 397
BsmI GAATGC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 442
Bsp143I GATC 2 cut(s) 71, 439
BspACI CCGC 3 cut(s) 23, 122, 398
BspEI TCCGGA 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 434
BsrDI GCAATG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 71, 439
BssT1I CCWWGG 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 422, 519
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 5 cut(s) 35, 107, 130, 256, 428
BstKTI GATC 2 cut(s) 74, 442
BstMBI GATC 2 cut(s) 71, 439
BstSLI GKGCMC 1 cut(s) 29
BstV2I GAAGAC 3 cut(s) 51, 237, 369
BtsCI GGATG 5 cut(s) 35, 107, 130, 256, 428
BtsIMutI CAGTG 1 cut(s) 524
Cac8I GCNNGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 418
CviAII CATG 1 cut(s) 320
CviJI RGCY 4 cut(s) 230, 263, 397, 412
CviKI_1 RGCY 4 cut(s) 230, 263, 397, 412
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 73, 441
DpnII GATC 2 cut(s) 71, 439
DraIII CACNNNGTG 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 406
Eco47I GGWCC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 1 cut(s) 323
FaiI YATR 9 cut(s) 111, 187, 204, 260, 317, 321, 402, 416, 535
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 1 cut(s) 397
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 398
FokI GGATG 5 cut(s) 22, 114, 137, 263, 415
Fsp4HI GCNGC 1 cut(s) 398
GluI GCNGC 1 cut(s) 398
HapII CCGG 1 cut(s) 443
Hin1II CATG 1 cut(s) 323
HinfI GANTC 2 cut(s) 376, 446
HpaII CCGG 1 cut(s) 443
HphI GGTGA 2 cut(s) 104, 184
Hpy188I TCNGA 2 cut(s) 15, 250
Hpy188III TCNNGA 2 cut(s) 350, 443
HpyAV CCTTC 2 cut(s) 347, 452
HpyCH4III ACNGT 2 cut(s) 422, 519
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 6 cut(s) 53, 270, 319, 428, 497, 524
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 442
Kzo9I GATC 2 cut(s) 71, 439
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 1 cut(s) 456
LweI GCATC 3 cut(s) 115, 437, 484
MaeII ACGT 1 cut(s) 225
MalI GATC 2 cut(s) 73, 441
MboI GATC 2 cut(s) 71, 439
MboII GAAGA 7 cut(s) 51, 237, 296, 313, 374, 441, 481
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 5 cut(s) 49, 247, 280, 327, 468
Mph1103I ATGCAT 1 cut(s) 321
MroI TCCGGA 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 280
NdeII GATC 2 cut(s) 71, 439
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 321
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 1 cut(s) 399
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 2 cut(s) 71, 439
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 1 cut(s) 385
SduI GDGCHC 1 cut(s) 29
SetI ASST 2 cut(s) 146, 228
SfaNI GCATC 3 cut(s) 115, 437, 484
SinI GGWCC 1 cut(s) 418
Sse9I AATT 1 cut(s) 167
SsiI CCGC 3 cut(s) 23, 122, 398
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 422, 519
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 41, 190
TasI AATT 1 cut(s) 167
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 524
TspDTI ATGAA 4 cut(s) 209, 336, 375, 384
TspRI CASTG 1 cut(s) 524
VpaK11BI GGWCC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.