Rmu_sc0005014.1_g000005

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005014.1
OG0000698
Physical Location & Seq
Forward (+)
61811 .. 62197
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005014.1_g000005.1.cds

Sequence Viewer

Length: 387 bp
atgtgggaagtagttaatgttggaatatatcgaatgaagcaacatattgcctacattaagggaaatgtagccccgtctaagaagtttttcaatgaggataaagtcaaatgtaagaatgttattgaagaggcaaaggctaacaagagacaaaagaataaacatgaaattgaattgagggaagaagttatagttgaagaagatgagggagttgaagggagtcaagggacaagaagaaagcaacatcttcttgggcctatggacagttttacatccaccatcgatctcgattcttcaatggatgaaagtaagaaagtgagacaacaaaatatcaatgatgcactttggcagcacagaacttatagtgtgcatcaatatttggctagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

128

Amino Acids

15.0

Weight (kDa)

8.63

Isoelectric Point (pI)

59.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 6 cut(s) 91, 125, 170, 194, 212, 294
Alw26I GTCTC 2 cut(s) 139, 310
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 358
BccI CCATC 1 cut(s) 284
BcoDI GTCTC 2 cut(s) 139, 310
BfaI CTAG 1 cut(s) 381
BisI GCNGC 1 cut(s) 347
BlsI GCNGC 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 251
BmsI GCATC 2 cut(s) 325, 376
Bsa29I ATCGAT 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 279
BseGI GGATG 2 cut(s) 269, 304
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 1 cut(s) 253
BshVI ATCGAT 1 cut(s) 279
BslFI GGGAC 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 139, 310
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 280
BspANI GGCC 1 cut(s) 253
BspDI ATCGAT 1 cut(s) 279
BssMI GATC 1 cut(s) 280
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 269, 304
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 139, 310
BstMBI GATC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 2 cut(s) 269, 304
Cfr13I GGNCC 1 cut(s) 251
ClaI ATCGAT 1 cut(s) 279
CviAII CATG 1 cut(s) 161
CviJI RGCY 4 cut(s) 71, 137, 253, 380
CviKI_1 RGCY 4 cut(s) 71, 137, 253, 380
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
FaeI CATG 1 cut(s) 164
FaiI YATR 6 cut(s) 28, 45, 162, 188, 257, 360
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 2 cut(s) 256, 311
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 347
HaeIII GGCC 1 cut(s) 253
Hin1II CATG 1 cut(s) 164
HinfI GANTC 2 cut(s) 217, 287
Hpy188III TCNNGA 1 cut(s) 284
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 338, 367
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 2 cut(s) 325, 376
MaeI CTAG 1 cut(s) 381
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 7 cut(s) 137, 191, 206, 209, 236, 243, 282
MluCI AATT 2 cut(s) 165, 170
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 4 cut(s) 88, 121, 168, 196
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 15, 57
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 164
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 348
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 251
SaqAI TTAA 2 cut(s) 15, 57
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 226
SfaNI GCATC 2 cut(s) 325, 376
SgeI CNNG 7 cut(s) 85, 154, 173, 233, 240, 260, 296
Sse9I AATT 2 cut(s) 165, 170
SspI AATATT 1 cut(s) 374
SspMI CTAG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 3 cut(s) 31, 279, 285
TasI AATT 2 cut(s) 165, 170
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 15, 57
Tru9I TTAA 2 cut(s) 15, 57
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 50, 177, 315
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.