Rroxscaffold_5G00355490

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000698
Physical Location & Seq
Reverse (-)
34202198 .. 34204395
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355490.1

Sequence Viewer

Length: 429 bp
ATGAAGCAACACATTGCTAACATCAAGGGGAATGTTGCCTCATGCAAGAATTCTACGGATGCCGATAAAGACAAATGTATAGCCGCAATAGAGGGAGCAAAAATTAAGAGAAAGCAAAAGGATATGCATGAGAAGGAAGTGAGGGAAGAAGTTGAAGTTTCTCAATCACATGATGTAGAAGATGTAGAAATTGAAGGGCCAAGTTTGTCAAGAAAAAGGCCGCACTTTCTTGGGCCTATAAACAAGTTTGCATCTTCAATCACTCCCGATTCTTCAATTGATGGAAGCAAGAAGATGCGTCAACAAAACATTAAGATGCCATTTGGAATAAAAGAACACATAGTGTGCATCAATGGTAGGCTAGGTGGGTGTATGAAGCCGGCATTCAATTTCATGTCATTGATAATGATAGTTTCCAAAGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

9.06

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 221
AcsI RAATTY 1 cut(s) 49
AdeI CACNNNGTG 1 cut(s) 343
AgsI TTSAA 5 cut(s) 155, 194, 258, 276, 388
AoxI GGCC 3 cut(s) 197, 218, 233
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 197, 233
BccI CCATC 1 cut(s) 275
BfaI CTAG 1 cut(s) 362
BisI GCNGC 2 cut(s) 84, 221
BlsI GCNGC 2 cut(s) 85, 222
BmgT120I GGNCC 2 cut(s) 197, 233
BmsI GCATC 5 cut(s) 49, 260, 285, 306, 357
Bse118I RCCGGY 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 12
BseGI GGATG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 12
BshFI GGCC 3 cut(s) 199, 220, 235
BsiSI CCGG 1 cut(s) 380
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 3 cut(s) 199, 220, 235
BspACI CCGC 2 cut(s) 84, 221
BspANI GGCC 3 cut(s) 199, 220, 235
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 379
BstC8I GCNNGC 1 cut(s) 381
BstF5I GGATG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 199, 220, 235
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 2 cut(s) 197, 233
CseI GACGC 1 cut(s) 287
CviAII CATG 4 cut(s) 42, 128, 170, 394
CviJI RGCY 6 cut(s) 83, 199, 220, 235, 361, 379
CviKI_1 RGCY 6 cut(s) 83, 199, 220, 235, 361, 379
DraIII CACNNNGTG 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 49
EcoT22I ATGCAT 1 cut(s) 129
FaeI CATG 4 cut(s) 45, 131, 173, 397
FaiI YATR 9 cut(s) 43, 80, 125, 129, 171, 239, 341, 374, 395
FatI CATG 4 cut(s) 41, 127, 169, 393
Fnu4HI GCNGC 2 cut(s) 84, 221
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 84, 221
FspBI CTAG 1 cut(s) 362
GluI GCNGC 2 cut(s) 84, 221
HaeIII GGCC 3 cut(s) 199, 220, 235
HapII CCGG 1 cut(s) 380
HgaI GACGC 1 cut(s) 287
Hin1II CATG 4 cut(s) 45, 131, 173, 397
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 2 cut(s) 210, 266
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 2 cut(s) 127, 188
HpyCH4V TGCA 4 cut(s) 45, 127, 251, 348
Hsp92II CATG 4 cut(s) 45, 131, 173, 397
KroI GCCGGC 1 cut(s) 379
KroNI GCCGGC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 1 cut(s) 393
LweI GCATC 5 cut(s) 49, 260, 285, 306, 357
MaeI CTAG 1 cut(s) 362
MboII GAAGA 5 cut(s) 158, 191, 246, 264, 304
MfeI CAATTG 1 cut(s) 276
MluCI AATT 5 cut(s) 49, 102, 189, 276, 388
MnlI CCTC 3 cut(s) 49, 85, 135
Mph1103I ATGCAT 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 379
MseI TTAA 2 cut(s) 105, 312
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 1 cut(s) 380
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 383
NaeI GCCGGC 1 cut(s) 381
NgoMIV GCCGGC 1 cut(s) 379
NlaIII CATG 4 cut(s) 45, 131, 173, 397
NsiI ATGCAT 1 cut(s) 129
PctI GAATGC 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 2 cut(s) 85, 222
PspPI GGNCC 2 cut(s) 197, 233
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 105, 312
SatI GCNGC 2 cut(s) 84, 221
Sau96I GGNCC 2 cut(s) 197, 233
SetI ASST 1 cut(s) 367
SfaNI GCATC 5 cut(s) 49, 260, 285, 306, 357
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 5 cut(s) 49, 102, 189, 276, 388
SsiI CCGC 2 cut(s) 84, 221
SspMI CTAG 1 cut(s) 362
TasI AATT 5 cut(s) 49, 102, 189, 276, 388
TauI GCSGC 2 cut(s) 86, 223
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 105, 312
Tru9I TTAA 2 cut(s) 105, 312
TspDTI ATGAA 3 cut(s) 17, 382, 389
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 1 cut(s) 49
XspI CTAG 1 cut(s) 362
Zsp2I ATGCAT 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.