Rmu_sc0007296.1_g000009

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007296.1
OG0000698
Physical Location & Seq
Forward (+)
34750 .. 35385
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007296.1_g000009.1.cds

Sequence Viewer

Length: 636 bp
atggcgggtactacatcttcttcgacatctaatgcaatgccggagatgggttcatcattgaagcgtggttcgggtgatattggatgggaatttgtggagttggaggatgcttcaaacttggataggttgaagtgtaagttgtgtgggaaattagtgagtggtgggatatatcgaatgaagcaacatattgctcacatcaagggcaatgtggctccttgtaaaaagtcttcggatgaggataaagccaaatgcaagaatgttattgaagatgcaaagtctaagaagaaacaaaagagtagacatgaagcagaagtgaggcaagaagtcattcttaaaggagatgaagacaatgaagtgagtcaagggacaagaagaatgccgcatactcttgggcctatggatcgttttgcatcccccattgatccggattcttcattggatggaagtaggaagatgaggcaacaaaatatcaataatgcacttttcaagcaaagaacacatagtgtgcatcaatacttggctagatgggtgtatgaagccgggattcattttcatgtcgttgatagtgatagcttcaagaggtttgtcgaagcgattggtcaatttggcccgggttacatgtggttcaagtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

9.21

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 2 cut(s) 5, 380
AclWI GGATC 2 cut(s) 408, 416
AcsI RAATTY 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 7 cut(s) 61, 114, 130, 266, 487, 577, 628
AluBI AGCT 1 cut(s) 573
AluI AGCT 1 cut(s) 573
AlwI GGATC 2 cut(s) 408, 416
Ama87I CYCGRG 1 cut(s) 610
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 392, 607
ApoI RAATTY 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 392, 608
AsuC2I CCSGG 3 cut(s) 541, 611, 612
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 610
BarI GAAGNNNNNNTAC 3 cut(s) 33, 211, 243
BbsI GAAGAC 2 cut(s) 219, 351
BccI CCATC 4 cut(s) 40, 78, 434, 519
BcnI CCSGG 3 cut(s) 541, 611, 612
BfaI CTAG 1 cut(s) 522
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 3 cut(s) 541, 611, 612
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 2 cut(s) 392, 608
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 3 cut(s) 541, 611, 612
BmsI GCATC 4 cut(s) 97, 259, 419, 517
BpiI GAAGAC 2 cut(s) 219, 351
BpuMI CCSGG 3 cut(s) 541, 611, 612
BsaJI CCNNGG 1 cut(s) 610
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse3DI GCAATG 2 cut(s) 42, 211
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 610
BseGI GGATG 5 cut(s) 89, 112, 238, 410, 445
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 42, 211
BshFI GGCC 2 cut(s) 394, 609
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 4 cut(s) 41, 425, 540, 611
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 47
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 2 cut(s) 394, 609
BsoBI CYCGRG 1 cut(s) 610
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 400, 421
BspACI CCGC 2 cut(s) 5, 380
BspANI GGCC 2 cut(s) 394, 609
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 213
BspPI GGATC 2 cut(s) 408, 416
BsrDI GCAATG 2 cut(s) 42, 211
BssECI CCNNGG 1 cut(s) 610
BssMI GATC 2 cut(s) 400, 421
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 5 cut(s) 89, 112, 238, 410, 445
BstKTI GATC 2 cut(s) 403, 424
BstMBI GATC 2 cut(s) 400, 421
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 3 cut(s) 539, 609, 610
BstV2I GAAGAC 2 cut(s) 219, 351
BsuRI GGCC 2 cut(s) 394, 609
BtsCI GGATG 5 cut(s) 89, 112, 238, 410, 445
Cfr13I GGNCC 2 cut(s) 392, 608
Cfr9I CCCGGG 1 cut(s) 610
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 302, 554, 619
CviJI RGCY 7 cut(s) 212, 245, 394, 521, 539, 573, 609
CviKI_1 RGCY 7 cut(s) 212, 245, 394, 521, 539, 573, 609
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 279
DpnI GATC 2 cut(s) 402, 423
DpnII GATC 2 cut(s) 400, 421
DraIII CACNNNGTG 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 610
FaeI CATG 3 cut(s) 305, 557, 622
FaiI YATR 9 cut(s) 169, 186, 303, 384, 398, 501, 534, 555, 620
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 379
FatI CATG 3 cut(s) 301, 553, 618
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 5 cut(s) 96, 119, 245, 397, 452
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 394, 609
HapII CCGG 4 cut(s) 41, 425, 540, 611
Hin1II CATG 3 cut(s) 305, 557, 622
HinfI GANTC 3 cut(s) 358, 428, 544
HpaII CCGG 4 cut(s) 41, 425, 540, 611
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 425, 577
Hpy8I GTNNAC 1 cut(s) 299
HpyCH4V TGCA 6 cut(s) 35, 252, 272, 410, 479, 508
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 3 cut(s) 305, 557, 622
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 400, 421
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 54, 438, 553, 624
LweI GCATC 4 cut(s) 97, 259, 419, 517
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 402, 423
MboI GATC 2 cut(s) 400, 421
MboII GAAGA 9 cut(s) 9, 12, 219, 278, 295, 356, 384, 423, 463
MluCI AATT 3 cut(s) 89, 149, 602
MlyI GAGTC 1 cut(s) 367
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 5 cut(s) 97, 229, 309, 450, 573
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 4 cut(s) 41, 425, 540, 611
MspR9I CCNGG 3 cut(s) 541, 611, 612
Mva1269I GAATGC 1 cut(s) 381
NciI CCSGG 3 cut(s) 541, 611, 612
NdeII GATC 2 cut(s) 400, 421
NlaIII CATG 3 cut(s) 305, 557, 622
NlaIV GGNNCC 1 cut(s) 213
NspI RCATGY 1 cut(s) 622
PciI ACATGT 1 cut(s) 618
PctI GAATGC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 2 cut(s) 428, 544
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PscI ACATGT 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 392, 608
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 552
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 400, 421
Sau96I GGNCC 2 cut(s) 392, 608
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 3 cut(s) 541, 611, 612
SetI ASST 3 cut(s) 128, 575, 584
SfaNI GCATC 4 cut(s) 97, 259, 419, 517
SmaI CCCGGG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 3 cut(s) 89, 149, 602
SsiI CCGC 2 cut(s) 5, 380
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 3 cut(s) 539, 609, 610
TaqI TCGA 3 cut(s) 23, 172, 588
TasI AATT 3 cut(s) 89, 149, 602
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 2 cut(s) 428, 544
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TspDTI ATGAA 9 cut(s) 42, 191, 318, 357, 366, 423, 536, 542, 549
TspMI CCCGGG 1 cut(s) 610
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 622
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.