Rw3G023070

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000698
Physical Location & Seq
Reverse (-)
28715075 .. 28716538
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023070.1

Sequence Viewer

Length: 1248 bp
ATGCTTCAAGGAATTGGCAACCAACCTAGATTCAAAGGGGTAATTGAGAAGGCAAAGAGCTTCACCATCTATATTTATGCACATCACAAGACTTTGGCATTGATGAGGAAGTTTACAAAAAAAAGAGATATAGTGAGGCCGGGAGTCACTAGATTTGCAACCGATTTCCTCACTTTGCAAAGCTTGATGGAGAAGAAGAATGAGTTGAGAGCTATGATTAATAGTGATGAATGGAATGCAAGCAAGCATGCAAAAAGTGTAAAGGGGAAGGCGGCGGTGAATATTGCTTTGAGTGGTTCTTTTTGGAATGGGGTAAGTCTTTGCTTGAAGGTGTTTGCCCCTTTAGTCAAGGTGCTTCGCCTTGTTGATGAGGATAGAAAGCCATCAATGGGCTTTGTGCATGGAGAACTACTTAGAGCTAAAGAGGAGATTAAAATGGCATTCAAAGATCAAGAAGCTCACTATCGTCCATTCCTTGACATTGTTGATGGAAAAGCCCGTGGTCGACTTGATAGTCCATTGCATTTAGCGGGTTACCTCTTGAACCCTGACTACACATATGCCAATCCAACCGTTGAGAATGATAATATGGTCATGGATGGGTTCTTCACTTGTGTTGAGGTATTCTTTCCCGATGACATTCAAACTCAAAGTTTGGTGACAAATGTAGAATTGCACAAGTATTTGAAGAAAGATGGTGGATTTGGAAGAGCTTTGGCTAAGGCGGGATGCACACAAAATGATGACAATTATAATCCGGTTTTGTGGTGGAATATTTATGGAAACCTTGTACCAAAATTGCAAAGTATGGCTAAAAGTATACTTGCATTGACCACAAGCTCATCTGGATGTGAGAGAAATTGGAGCACTTTTGAGGGGATAAGTACTTATTTAATCCATACAAAGAAAAGGAAAAGACTAGACACAACGAGGTTAAACAATTTAGTCTATGTCCAATTCAATGCCAAGATCATCAACAAGAAGAGAAGAATGAAAGAGAAGAATGTGGATGTATTACTAGCAAGTGAAGCTACTATGGCCCAAGGATGGATTGTGGATGGTGGTGATGAAGATGTAGATTCCGATCTTACTAGTGAAGTAGTTGGAGAGGGATCGGGATTGGGAGTGGGAGTGGATAGTAGCTTAGAGCCTAGGAGAAGTTGTAGAATTCAAGAAATTAGAGAACTTCATGAGGAGGATTTTGTATCGGATGAAGAGGAAGAAGATGAGATGAATTTTGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

415

Amino Acids

47.03

Weight (kDa)

6.78

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 246 - 321 1.3e-08 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 753
AasI GACNNNNNNGTC 1 cut(s) 513
AccI GTMKAC 2 cut(s) 505, 820
AciI CCGC 4 cut(s) 272, 275, 530, 725
AclWI GGATC 1 cut(s) 1120
AcsI RAATTY 2 cut(s) 1167, 1234
AfaI GTAC 2 cut(s) 792, 886
AfiI CCNNNNNNNGG 2 cut(s) 389, 1047
AgsI TTSAA 9 cut(s) 8, 34, 328, 445, 544, 644, 688, 961, 1172
AhlI ACTAGT 1 cut(s) 1091
AluBI AGCT 9 cut(s) 60, 183, 212, 419, 458, 713, 840, 1031, 1143
AluI AGCT 9 cut(s) 60, 183, 212, 419, 458, 713, 840, 1031, 1143
Alw21I GWGCWC 1 cut(s) 869
AlwI GGATC 1 cut(s) 1120
AoxI GGCC 2 cut(s) 137, 1038
ApoI RAATTY 2 cut(s) 1167, 1234
AseI ATTAAT 1 cut(s) 219
AspA2I CCTAGG 1 cut(s) 1151
AspS9I GGNCC 1 cut(s) 1039
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 4 cut(s) 55, 289, 670, 1076
AvrII CCTAGG 1 cut(s) 1151
Bbv12I GWGCWC 1 cut(s) 869
BccI CCATC 8 cut(s) 74, 181, 391, 482, 593, 689, 1041, 1052
BcnI CCSGG 1 cut(s) 141
BcuI ACTAGT 1 cut(s) 1091
BfaI CTAG 7 cut(s) 27, 150, 920, 1019, 1092, 1152, 1246
BisI GCNGC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 1151
BlsI GCNGC 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 886
Bme1390I CCNGG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 1039
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 720
BpuMI CCSGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 1083
BsaJI CCNNGG 3 cut(s) 499, 1042, 1151
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 4 cut(s) 1116, 1146, 1147, 1177
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 1047
Bse3DI GCAATG 1 cut(s) 518
Bse8I GATNNNNATC 1 cut(s) 1083
BseDI CCNNGG 3 cut(s) 499, 1042, 1151
BseGI GGATG 7 cut(s) 604, 734, 854, 1015, 1052, 1063, 1216
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 2 cut(s) 389, 1047
BseMI GCAATG 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 440, 1208
BshFI GGCC 2 cut(s) 139, 1040
BsiHKAI GWGCWC 1 cut(s) 869
BsiSI CCGG 2 cut(s) 140, 758
BslI CCNNNNNNNGG 2 cut(s) 389, 1047
BsmI GAATGC 2 cut(s) 241, 440
BsnI GGCC 2 cut(s) 139, 1040
Bsp1286I GDGCHC 1 cut(s) 869
Bsp143I GATC 4 cut(s) 448, 969, 1084, 1112
BspACI CCGC 4 cut(s) 272, 275, 530, 725
BspANI GGCC 2 cut(s) 139, 1040
BspHI TCATGA 1 cut(s) 1189
BspPI GGATC 1 cut(s) 1120
BspQI GCTCTTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 518
BssECI CCNNGG 3 cut(s) 499, 1042, 1151
BssMI GATC 4 cut(s) 448, 969, 1084, 1112
BssNAI GTATAC 1 cut(s) 821
BssT1I CCWWGG 2 cut(s) 1042, 1151
Bst1107I GTATAC 1 cut(s) 821
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 3 cut(s) 703, 977, 1209
BstC8I GCNNGC 3 cut(s) 241, 245, 249
BstDEI CTNAG 3 cut(s) 413, 720, 1144
BstDSI CCRYGG 1 cut(s) 499
BstEII GGTNACC 1 cut(s) 533
BstF5I GGATG 7 cut(s) 604, 734, 854, 1015, 1052, 1063, 1216
BstKTI GATC 4 cut(s) 451, 972, 1087, 1115
BstMBI GATC 4 cut(s) 448, 969, 1084, 1112
BstMWI GCNNNNNNNGC 2 cut(s) 1028, 1037
BstNSI RCATGY 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 139
BstZ17I GTATAC 1 cut(s) 821
BsuRI GGCC 2 cut(s) 139, 1040
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 7 cut(s) 604, 734, 854, 1015, 1052, 1063, 1216
Cac8I GCNNGC 3 cut(s) 241, 245, 249
CciI TCATGA 1 cut(s) 1189
Cfr13I GGNCC 1 cut(s) 1039
Csp6I GTAC 2 cut(s) 791, 885
CviAII CATG 4 cut(s) 248, 401, 595, 1190
CviQI GTAC 2 cut(s) 791, 885
DdeI CTNAG 3 cut(s) 413, 720, 1144
DpnI GATC 4 cut(s) 450, 971, 1086, 1114
DpnII GATC 4 cut(s) 448, 969, 1084, 1112
DrdI GACNNNNNNGTC 1 cut(s) 513
DseDI GACNNNNNNGTC 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 703, 977, 1209
EarI CTCTTC 3 cut(s) 703, 977, 1209
Eco130I CCWWGG 2 cut(s) 1042, 1151
Eco91I GGTNACC 1 cut(s) 533
EcoO65I GGTNACC 1 cut(s) 533
EcoRI GAATTC 1 cut(s) 1167
EcoT14I CCWWGG 2 cut(s) 1042, 1151
ErhI CCWWGG 2 cut(s) 1042, 1151
FaeI CATG 4 cut(s) 251, 404, 598, 1193
FatI CATG 4 cut(s) 247, 400, 594, 1189
FauI CCCGC 2 cut(s) 523, 718
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 2 cut(s) 505, 820
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 7 cut(s) 611, 741, 861, 1022, 1059, 1070, 1223
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 7 cut(s) 27, 150, 920, 1019, 1092, 1152, 1246
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 2 cut(s) 139, 1040
HapII CCGG 2 cut(s) 140, 758
Hin1II CATG 4 cut(s) 251, 404, 598, 1193
HincII GTYRAC 1 cut(s) 506
HindII GTYRAC 1 cut(s) 506
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 3 cut(s) 30, 144, 1079
HpaII CCGG 2 cut(s) 140, 758
HphI GGTGA 4 cut(s) 55, 289, 670, 1076
Hpy166II GTNNAC 3 cut(s) 114, 506, 821
Hpy188I TCNGA 2 cut(s) 1084, 1210
Hpy188III TCNNGA 7 cut(s) 452, 541, 632, 846, 1116, 1172, 1190
Hpy8I GTNNAC 3 cut(s) 114, 506, 821
HpyAV CCTTC 3 cut(s) 43, 262, 322
HpyCH4III ACNGT 1 cut(s) 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 1028, 1037
HpyF3I CTNAG 3 cut(s) 413, 720, 1144
Hsp92II CATG 4 cut(s) 251, 404, 598, 1193
Kzo9I GATC 4 cut(s) 448, 969, 1084, 1112
LguI GCTCTTC 1 cut(s) 703
LmnI GCTCC 1 cut(s) 864
LpnPI CCDG 4 cut(s) 153, 561, 771, 831
LweI GCATC 1 cut(s) 719
MaeI CTAG 7 cut(s) 27, 150, 920, 1019, 1092, 1152, 1246
MaeIII GTNAC 3 cut(s) 145, 533, 658
MalI GATC 4 cut(s) 450, 971, 1086, 1114
MboI GATC 4 cut(s) 448, 969, 1084, 1112
MhlI GDGCHC 1 cut(s) 869
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 2 cut(s) 593, 1084
MseI TTAA 4 cut(s) 219, 432, 893, 935
MslI CAYNNNNRTG 1 cut(s) 847
MspI CCGG 2 cut(s) 140, 758
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 2 cut(s) 241, 440
MwoI GCNNNNNNNGC 2 cut(s) 1028, 1037
NciI CCSGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 559
NdeII GATC 4 cut(s) 448, 969, 1084, 1112
NlaIII CATG 4 cut(s) 251, 404, 598, 1193
NmuCI GTSAC 2 cut(s) 145, 658
NspI RCATGY 1 cut(s) 251
PaeI GCATGC 1 cut(s) 251
PagI TCATGA 1 cut(s) 1189
PciSI GCTCTTC 1 cut(s) 703
PctI GAATGC 2 cut(s) 241, 440
PfeI GAWTC 2 cut(s) 30, 1079
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 753
PspEI GGTNACC 1 cut(s) 533
PspPI GGNCC 1 cut(s) 1039
PsrI GAACNNNNNNTAC 2 cut(s) 536, 568
RsaI GTAC 2 cut(s) 792, 886
RsaNI GTAC 2 cut(s) 791, 885
RseI CAYNNNNRTG 1 cut(s) 847
SalI GTCGAC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 703
SaqAI TTAA 4 cut(s) 219, 432, 893, 935
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 448, 969, 1084, 1112
Sau96I GGNCC 1 cut(s) 1039
ScaI AGTACT 1 cut(s) 886
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 869
SfaNI GCATC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 847
SpeI ACTAGT 1 cut(s) 1091
SphI GCATGC 1 cut(s) 251
SsiI CCGC 4 cut(s) 272, 275, 530, 725
SspI AATATT 2 cut(s) 283, 775
SspMI CTAG 7 cut(s) 27, 150, 920, 1019, 1092, 1152, 1246
StyD4I CCNGG 1 cut(s) 139
StyI CCWWGG 2 cut(s) 1042, 1151
TaaI ACNGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 505
TatI WGTACW 1 cut(s) 884
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 30, 1079
Tru1I TTAA 4 cut(s) 219, 432, 893, 935
Tru9I TTAA 4 cut(s) 219, 432, 893, 935
TseFI GTSAC 2 cut(s) 145, 658
Tsp45I GTSAC 2 cut(s) 145, 658
TspDTI ATGAA 6 cut(s) 243, 1007, 1083, 1178, 1227, 1247
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 2 cut(s) 1167, 1234
XceI RCATGY 1 cut(s) 251
XmaJI CCTAGG 1 cut(s) 1151
XmiI GTMKAC 2 cut(s) 505, 820
XspI CTAG 7 cut(s) 27, 150, 920, 1019, 1092, 1152, 1246
ZrmI AGTACT 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.