Rmu_co8211970.1_g000002

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8211970.1
OG0000698
Physical Location & Seq
Forward (+)
153 .. 524
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8211970.1_g000002.1.cds

Sequence Viewer

Length: 372 bp
atgccacatactcttgggcctatggaccgttttgcatcccccatcgatccggattcttcattgcatggaagtaggaagatgaggcaacaaaatattaatgatgcacttttcaagcaaagaacacatagtgtgcatcaatacttggctagatgggtgtataaagccgggatttcttttcatgccattgatagtgatagcttcaagaggtttgtcatagcggttggtcaatttggcctgggttaccgacctccaagccaataccaattaagggagccattattgaaggaagaggtagagagaactaaaagttctttgaagaagcaagaagaagagtgggctttgaatggttgctctattatgaccgatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

9.13

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 5 cut(s) 112, 202, 283, 316, 343
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AlwI GGATC 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 2 cut(s) 17, 232
AseI ATTAAT 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 17, 25
AsuC2I CCSGG 1 cut(s) 166
AvaII GGWCC 1 cut(s) 25
BccI CCATC 2 cut(s) 50, 144
BciT130I CCWGG 1 cut(s) 236
BcnI CCSGG 1 cut(s) 166
BfaI CTAG 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 166, 236
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 17, 25
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 166, 236
BmsI GCATC 4 cut(s) 44, 91, 142, 355
BpuMI CCSGG 1 cut(s) 166
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMI GCAATG 1 cut(s) 59
BshFI GGCC 2 cut(s) 19, 234
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 2 cut(s) 50, 165
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 2 cut(s) 19, 234
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 19, 234
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 282, 324
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 1 cut(s) 35
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 236
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 164, 234
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 2 cut(s) 19, 234
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 17, 25
ClaI ATCGAT 1 cut(s) 45
CviAII CATG 2 cut(s) 65, 179
CviJI RGCY 8 cut(s) 19, 146, 164, 198, 234, 255, 274, 338
CviKI_1 RGCY 8 cut(s) 19, 146, 164, 198, 234, 255, 274, 338
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 282, 324
EarI CTCTTC 2 cut(s) 282, 324
Eco47I GGWCC 1 cut(s) 25
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 68, 182
FaiI YATR 8 cut(s) 9, 23, 66, 126, 159, 180, 215, 359
FatI CATG 2 cut(s) 64, 178
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 147
HaeIII GGCC 2 cut(s) 19, 234
HapII CCGG 2 cut(s) 50, 165
Hin1II CATG 2 cut(s) 68, 182
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 50, 165
Hpy188III TCNNGA 2 cut(s) 50, 202
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 35, 64, 104, 133
Hsp92II CATG 2 cut(s) 68, 182
Kpn2I TCCGGA 1 cut(s) 49
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 63, 178, 221, 248
LweI GCATC 4 cut(s) 44, 91, 142, 355
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 6 cut(s) 48, 88, 299, 328, 338, 341
MluCI AATT 2 cut(s) 227, 263
MnlI CCTC 4 cut(s) 75, 198, 258, 283
MroI TCCGGA 1 cut(s) 49
MseI TTAA 2 cut(s) 96, 266
MspI CCGG 2 cut(s) 50, 165
MspR9I CCNGG 2 cut(s) 166, 236
MvaI CCWGG 1 cut(s) 236
NciI CCSGG 1 cut(s) 166
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 68, 182
NlaIV GGNNCC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 2 cut(s) 17, 25
SaqAI TTAA 2 cut(s) 96, 266
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 17, 25
ScrFI CCNGG 2 cut(s) 166, 236
SetI ASST 4 cut(s) 200, 209, 250, 294
SfaNI GCATC 4 cut(s) 44, 91, 142, 355
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 227, 263
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 94
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 164, 234
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 227, 263
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 2 cut(s) 96, 266
Tru9I TTAA 2 cut(s) 96, 266
TspDTI ATGAA 2 cut(s) 48, 167
VpaK11BI GGWCC 1 cut(s) 25
VspI ATTAAT 1 cut(s) 96
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.