FvH4_3g32705

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000698
Physical Location & Seq
Reverse (-)
28024429 .. 28024855
427 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32705.t1

Sequence Viewer

Length: 315 bp
ATGGCGGGTACAACGTCTTTTGAAGCGTCGAATACAATGTTGGAGAATGAGATGTATGTGAAGCGTAAATCTGATGATGTTGGATGGGAATATGGGGCATTGGTGAACCTTTCAAATTTAGACAAGGTGAAGTGCAAGTTATGTGGTAAAGTACTTAGTGGTGGAATATATCGGCTCAAGCAACATATTGCCCACATAAAAGGGACTGTGGCTTCGTGTAATATGTCTTCAGATGAGGATAAGAATAAGTGCTTATGCTATGCACTTATGGATATGGAAGTTGTAAACTTGCCGGCTTGCGATATTTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

105

Amino Acids

11.47

Weight (kDa)

6.07

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 10, 153
AgsI TTSAA 2 cut(s) 23, 114
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
ApoI RAATTY 1 cut(s) 115
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AsuHPI GGTGA 2 cut(s) 115, 139
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbsI GAAGAC 1 cut(s) 219
BccI CCATC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 292
BseGI GGATG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 217
BspACI CCGC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 294, 298
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 219
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 294, 298
Cfr10I RCCGGY 1 cut(s) 292
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 9, 152
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviJI RGCY 3 cut(s) 175, 212, 296
CviKI_1 RGCY 3 cut(s) 175, 212, 296
CviQI GTAC 2 cut(s) 9, 152
DdeI CTNAG 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 213
FaqI GGGAC 1 cut(s) 217
FokI GGATG 1 cut(s) 96
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 15
HpaII CCGG 1 cut(s) 293
HphI GGTGA 2 cut(s) 115, 139
Hpy166II GTNNAC 2 cut(s) 106, 286
Hpy188I TCNGA 2 cut(s) 73, 232
Hpy8I GTNNAC 2 cut(s) 106, 286
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 135, 263, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 14
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
LpnPI CCDG 1 cut(s) 306
MaeII ACGT 1 cut(s) 14
MboII GAAGA 1 cut(s) 219
MluCI AATT 1 cut(s) 115
MmeI TCCRAC 2 cut(s) 21, 61
MnlI CCTC 1 cut(s) 229
MroNI GCCGGC 1 cut(s) 292
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 306
NaeI GCCGGC 1 cut(s) 294
NgoMIV GCCGGC 1 cut(s) 292
PdiI GCCGGC 1 cut(s) 294
RsaI GTAC 2 cut(s) 10, 153
RsaNI GTAC 2 cut(s) 9, 152
ScaI AGTACT 1 cut(s) 153
SetI ASST 3 cut(s) 17, 111, 129
SgeI CNNG 8 cut(s) 18, 136, 148, 190, 228, 301, 305, 309
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 115
SsiI CCGC 1 cut(s) 5
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 115
TatI WGTACW 1 cut(s) 151
XapI RAATTY 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.