RchiOBHm_Chr6g0288501

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000698
Physical Location & Seq
Reverse (-)
51742576 .. 51743808
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25886

Sequence Viewer

Length: 240 bp
ATGAGGCAGCAACCAAGGCGTCCAAGGGGCAAAAAACGACGCCTGAGGCGTCCTAGGCGCACGCGCAGTGTGCTTGCAGATTTGGAGTTCGACTTGCAGACAAGATTTGAAGCAACAATGAGTTCTAGTACTACTACTAGTGGGACAACAAAGAAAGATCATGCTTGGAAATGGGCTAAACCAATTCCGGGGGAGTTGAAGTATTTTTTGTTCTTGATCTTTGGTGTCATTTATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

79

Amino Acids

9.38

Weight (kDa)

11.57

Isoelectric Point (pI)

68.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 64
AcyI GRCGYC 3 cut(s) 19, 40, 49
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 110, 199
AhlI ACTAGT 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 7
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 2 cut(s) 60, 66
AsuC2I CCSGG 1 cut(s) 189
AvrII CCTAGG 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 44
BbvI GCAGC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 3 cut(s) 54, 126, 138
BisI GCNGC 1 cut(s) 8
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 1 cut(s) 9
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 189
BsaHI GRCGYC 3 cut(s) 19, 40, 49
BsaJI CCNNGG 4 cut(s) 14, 23, 53, 188
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 44
BseDI CCNNGG 4 cut(s) 14, 23, 53, 188
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 157
Bsp143I GATC 2 cut(s) 157, 216
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 64
BssECI CCNNGG 4 cut(s) 14, 23, 53, 188
BssMI GATC 2 cut(s) 157, 216
BssNI GRCGYC 3 cut(s) 19, 40, 49
BssT1I CCWWGG 3 cut(s) 14, 23, 53
BstACI GRCGYC 3 cut(s) 19, 40, 49
BstC8I GCNNGC 2 cut(s) 62, 75
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 2 cut(s) 60, 66
BstKTI GATC 2 cut(s) 160, 219
BstMBI GATC 2 cut(s) 157, 216
BstMWI GCNNNNNNNGC 3 cut(s) 16, 55, 70
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 44
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 62, 75
CfoI GCGC 2 cut(s) 60, 66
CseI GACGC 3 cut(s) 8, 38, 48
Csp6I GTAC 1 cut(s) 129
CviAII CATG 1 cut(s) 161
CviJI RGCY 1 cut(s) 176
CviKI_1 RGCY 1 cut(s) 176
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 1 cut(s) 44
DpnI GATC 2 cut(s) 159, 218
DpnII GATC 2 cut(s) 157, 216
Eco130I CCWWGG 3 cut(s) 14, 23, 53
Eco81I CCTNAGG 1 cut(s) 44
EcoT14I CCWWGG 3 cut(s) 14, 23, 53
ErhI CCWWGG 3 cut(s) 14, 23, 53
FaeI CATG 1 cut(s) 164
FaiI YATR 2 cut(s) 162, 234
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 8
FspBI CTAG 3 cut(s) 54, 126, 138
GlaI GCGC 2 cut(s) 59, 65
GluI GCNGC 1 cut(s) 8
HapII CCGG 1 cut(s) 188
HgaI GACGC 3 cut(s) 8, 38, 48
HhaI GCGC 2 cut(s) 60, 66
Hin1I GRCGYC 3 cut(s) 19, 40, 49
Hin1II CATG 1 cut(s) 164
Hin6I GCGC 2 cut(s) 58, 64
HinP1I GCGC 2 cut(s) 58, 64
HpaII CCGG 1 cut(s) 188
Hpy188III TCNNGA 1 cut(s) 214
Hpy99I CGWCG 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 77, 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 55, 70
HpyF3I CTNAG 1 cut(s) 44
Hsp92I GRCGYC 3 cut(s) 19, 40, 49
Hsp92II CATG 1 cut(s) 164
HspAI GCGC 2 cut(s) 58, 64
Kzo9I GATC 2 cut(s) 157, 216
LpnPI CCDG 2 cut(s) 56, 201
Lsp1109I GCAGC 1 cut(s) 19
MaeI CTAG 3 cut(s) 54, 126, 138
MalI GATC 2 cut(s) 159, 218
MboI GATC 2 cut(s) 157, 216
MluCI AATT 1 cut(s) 183
MnlI CCTC 1 cut(s) 39
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 3 cut(s) 16, 55, 70
NciI CCSGG 1 cut(s) 189
NdeII GATC 2 cut(s) 157, 216
NlaIII CATG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PkrI GCNGC 1 cut(s) 9
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 2 cut(s) 157, 216
ScaI AGTACT 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 189
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 1 cut(s) 183
SspMI CTAG 3 cut(s) 54, 126, 138
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 3 cut(s) 14, 23, 53
TaqI TCGA 1 cut(s) 90
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 128
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 7
TspRI CASTG 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 3 cut(s) 54, 126, 138
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.