Rmu_sc0003369.1_g000011

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003369.1
OG0000698
Physical Location & Seq
Forward (+)
26892 .. 27233
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003369.1_g000011.1.cds

Sequence Viewer

Length: 342 bp
atgaatagactagatacaacaaggttgagcaatttaatctatgttcaattcaatgccaagatcatcaacaaaaagagaagggagaaagagaggggagttgatgtaatacttgctaatgaagctagtatggctcaaggatggattgttgatggtggtgatgaaaaagttgagttgggtgaaatggttggagaggcatcaggagtggataatgtcttagagcttaggagaggttctagaaatgtggaagtaagagaacttcatgaagaaaattttgtatcggatgaggacacggaagaggagggaaatgaggaggcttatgagtttgagtccgatatggagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

113

Amino Acids

12.92

Weight (kDa)

4.41

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 268
AgsI TTSAA 2 cut(s) 47, 52
AluBI AGCT 2 cut(s) 122, 220
AluI AGCT 2 cut(s) 122, 220
ApoI RAATTY 1 cut(s) 268
AsuHPI GGTGA 2 cut(s) 167, 188
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BccI CCATC 2 cut(s) 132, 143
BfaI CTAG 3 cut(s) 11, 123, 234
BmsI GCATC 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
BseGI GGATG 2 cut(s) 143, 286
BseRI GAGGAG 2 cut(s) 311, 323
Bsp143I GATC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 259
BssMI GATC 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 288
BstDEI CTNAG 2 cut(s) 214, 221
BstF5I GGATG 2 cut(s) 143, 286
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BtsCI GGATG 2 cut(s) 143, 286
CciI TCATGA 1 cut(s) 259
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 122, 131, 220, 314
CviKI_1 RGCY 4 cut(s) 122, 131, 220, 314
DdeI CTNAG 2 cut(s) 214, 221
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 42, 128, 261, 318, 335
FatI CATG 1 cut(s) 259
FokI GGATG 2 cut(s) 150, 293
FspBI CTAG 3 cut(s) 11, 123, 234
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 326
HphI GGTGA 2 cut(s) 167, 188
Hpy188I TCNGA 2 cut(s) 280, 331
Hpy188III TCNNGA 3 cut(s) 198, 234, 260
HpyAV CCTTC 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 2 cut(s) 214, 221
Hsp92II CATG 1 cut(s) 263
Kzo9I GATC 1 cut(s) 60
LpnPI CCDG 1 cut(s) 183
LweI GCATC 1 cut(s) 203
MaeI CTAG 3 cut(s) 11, 123, 234
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 275, 305
MluCI AATT 3 cut(s) 31, 47, 268
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 8 cut(s) 84, 184, 221, 277, 289, 292, 301, 304
MseI TTAA 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 263
PagI TCATGA 1 cut(s) 259
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 1 cut(s) 335
SetI ASST 4 cut(s) 26, 124, 222, 232
SfaNI GCATC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 31, 47, 268
SspMI CTAG 3 cut(s) 11, 123, 234
TasI AATT 3 cut(s) 31, 47, 268
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TspDTI ATGAA 5 cut(s) 17, 132, 174, 248, 276
TspGWI ACGGA 1 cut(s) 305
XapI RAATTY 1 cut(s) 268
XbaI TCTAGA 1 cut(s) 233
XspI CTAG 3 cut(s) 11, 123, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.