Rw2G033790

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000698
Physical Location & Seq
Reverse (-)
55220082 .. 55223122
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G033790.1

Sequence Viewer

Length: 846 bp
ATGGCGGGTACTACATCTTCCTCGGCATCTAATGCAATGTCGGAGATGGGTTCATCATTGAAGCGTGGTTCAGGTGATATTGGATGGGAATATGCGGAGTTGGCGGATGCTTCAAACTTGGATAGGTTGAAGTCGGGTTACCTCTTGAACCCTTACTACACATATGCCAATTCAAGCATTGAGAATGATAATATAGTCATGGATGGGTTCTTCACTTGTGTTGAGGTATTCTTTCCCGATGACATTCAAACTCAAAGTTTGGTGACAAATGTAGAATTGCACAAGTATTTGAAGAAAGAGGGTGGATTTGGAAGAAGTTTGGCTAAGGCGGGATGCGCACAAAATGATGACAATTATAATCCGGTTTTGTGGTGGAATATTTATGGTAACCTTGTACCAAAATTGCAAAGTATGGCTAAAAGGATACTTGCATTGACCACAAGCTCATCCGGATGTGAGAGAAATTGGAGCACTTTTGAGGGGATCCATACAAAGAAAAGGAATAGACTAGATACAACGAGGTTAAACAATTTAGTCTATGTCCAATTCAATGCCAAGATTCTCAACAAGAAGAGAAGAATGAAAGAGAGGAATGTGGATGTATTACTAGCATGTGAAGCTACTATGGCCCAAGGATGGATTGTGGATGGTGGTGATGAAGATGTAGATTCCGATCTTACTAGTGATGTAGTTGGAGAGGGATCGGGATTGGGAGTGGATAGTAGCTTAGAGCCTAGGAGAAGTAAACATTTTATCTATATTTTGAAATTTCCAATACTAAATTCTATTAATCTCTATCCGAACCAATATTATACTATTATAATATACAATAAGATTCTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

281

Amino Acids

31.49

Weight (kDa)

5.99

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 110 - 184 2.5e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 357, 821
Acc16I TGCGCA 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 449
AciI CCGC 4 cut(s) 5, 95, 104, 329
AclWI GGATC 3 cut(s) 478, 491, 709
AcsI RAATTY 2 cut(s) 767, 781
AfaI GTAC 2 cut(s) 10, 396
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 9 cut(s) 61, 114, 130, 148, 174, 248, 292, 550, 766
AhlI ACTAGT 1 cut(s) 680
AjuI GAANNNNNNNTTGG 2 cut(s) 766, 798
AluBI AGCT 3 cut(s) 444, 620, 726
AluI AGCT 3 cut(s) 444, 620, 726
Alw21I GWGCWC 1 cut(s) 473
AlwI GGATC 3 cut(s) 478, 491, 709
Aor13HI TCCGGA 1 cut(s) 449
AoxI GGCC 1 cut(s) 627
ApoI RAATTY 2 cut(s) 767, 781
AseI ATTAAT 1 cut(s) 789
AspA2I CCTAGG 1 cut(s) 734
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 3 cut(s) 86, 274, 665
AvrII CCTAGG 1 cut(s) 734
BamHI GGATCC 1 cut(s) 483
BarI GAAGNNNNNNTAC 3 cut(s) 33, 122, 154
Bbv12I GWGCWC 1 cut(s) 473
BccI CCATC 5 cut(s) 40, 78, 197, 630, 641
BciVI GTATCC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 4 cut(s) 509, 608, 681, 735
BfuI GTATCC 1 cut(s) 417
BlnI CCTAGG 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 1 cut(s) 485
BmsI GCATC 3 cut(s) 35, 97, 323
Bpu10I CCTNAGC 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 672
BsaJI CCNNGG 3 cut(s) 21, 631, 734
BsaWI WCCGGW 2 cut(s) 361, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 672
BseAI TCCGGA 1 cut(s) 449
BseDI CCNNGG 3 cut(s) 21, 631, 734
BseGI GGATG 9 cut(s) 89, 112, 208, 338, 446, 458, 604, 641, 652
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 42
BshFI GGCC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 2 cut(s) 362, 450
BslI CCNNNNNNNGG 1 cut(s) 636
BsnI GGCC 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 473
Bsp13I TCCGGA 1 cut(s) 449
Bsp143I GATC 3 cut(s) 483, 673, 701
BspACI CCGC 4 cut(s) 5, 95, 104, 329
BspANI GGCC 1 cut(s) 629
BspEI TCCGGA 1 cut(s) 449
BspLI GGNNCC 1 cut(s) 485
BspPI GGATC 3 cut(s) 478, 491, 709
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 21, 631, 734
BssMI GATC 3 cut(s) 483, 673, 701
BssT1I CCWWGG 2 cut(s) 631, 734
Bst6I CTCTTC 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 324, 727
BstEII GGTNACC 2 cut(s) 137, 386
BstF5I GGATG 9 cut(s) 89, 112, 208, 338, 446, 458, 604, 641, 652
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 3 cut(s) 486, 676, 704
BstMBI GATC 3 cut(s) 483, 673, 701
BstMWI GCNNNNNNNGC 5 cut(s) 32, 101, 335, 617, 626
BstNSI RCATGY 1 cut(s) 615
BstPI GGTNACC 2 cut(s) 137, 386
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 629
BtsCI GGATG 9 cut(s) 89, 112, 208, 338, 446, 458, 604, 641, 652
CfoI GCGC 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 628
Csp6I GTAC 2 cut(s) 9, 395
CviAII CATG 2 cut(s) 199, 612
CviJI RGCY 7 cut(s) 323, 416, 444, 620, 629, 726, 733
CviKI_1 RGCY 7 cut(s) 323, 416, 444, 620, 629, 726, 733
CviQI GTAC 2 cut(s) 9, 395
DdeI CTNAG 2 cut(s) 324, 727
DpnI GATC 3 cut(s) 485, 675, 703
DpnII GATC 3 cut(s) 483, 673, 701
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 631, 734
Eco91I GGTNACC 2 cut(s) 137, 386
EcoO65I GGTNACC 2 cut(s) 137, 386
EcoT14I CCWWGG 2 cut(s) 631, 734
ErhI CCWWGG 2 cut(s) 631, 734
FaeI CATG 2 cut(s) 202, 615
FatI CATG 2 cut(s) 198, 611
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 163
FokI GGATG 9 cut(s) 96, 119, 215, 345, 433, 465, 611, 648, 659
FspAI RTGCGCAY 1 cut(s) 337
FspBI CTAG 4 cut(s) 509, 608, 681, 735
FspI TGCGCA 1 cut(s) 337
GlaI GCGC 1 cut(s) 337
HaeIII GGCC 1 cut(s) 629
HapII CCGG 2 cut(s) 362, 450
HhaI GCGC 1 cut(s) 338
Hin1II CATG 2 cut(s) 202, 615
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HinfI GANTC 3 cut(s) 559, 668, 835
HpaII CCGG 2 cut(s) 362, 450
HphI GGTGA 3 cut(s) 86, 274, 665
Hpy166II GTNNAC 1 cut(s) 746
Hpy188I TCNGA 3 cut(s) 43, 673, 801
Hpy188III TCNNGA 4 cut(s) 145, 236, 450, 705
Hpy8I GTNNAC 1 cut(s) 746
HpyCH4V TGCA 4 cut(s) 35, 280, 406, 431
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 101, 335, 617, 626
HpyF3I CTNAG 2 cut(s) 324, 727
Hsp92II CATG 2 cut(s) 202, 615
HspAI GCGC 1 cut(s) 336
Kpn2I TCCGGA 1 cut(s) 449
Kzo9I GATC 3 cut(s) 483, 673, 701
LmnI GCTCC 1 cut(s) 468
LpnPI CCDG 3 cut(s) 57, 375, 463
LweI GCATC 3 cut(s) 35, 97, 323
MaeI CTAG 4 cut(s) 509, 608, 681, 735
MaeIII GTNAC 3 cut(s) 137, 262, 386
MalI GATC 3 cut(s) 485, 675, 703
MboI GATC 3 cut(s) 483, 673, 701
MboII GAAGA 7 cut(s) 9, 202, 304, 324, 583, 588, 671
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 9 cut(s) 169, 275, 352, 401, 463, 529, 545, 767, 781
MmeI TCCRAC 2 cut(s) 21, 673
MnlI CCTC 8 cut(s) 31, 152, 217, 292, 472, 513, 582, 691
MroI TCCGGA 1 cut(s) 449
MseI TTAA 3 cut(s) 524, 789, 844
MslI CAYNNNNRTG 1 cut(s) 451
MspI CCGG 2 cut(s) 362, 450
MwoI GCNNNNNNNGC 5 cut(s) 32, 101, 335, 617, 626
NdeI CATATG 1 cut(s) 163
NdeII GATC 3 cut(s) 483, 673, 701
NlaIII CATG 2 cut(s) 202, 615
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 337
NspI RCATGY 1 cut(s) 615
PfeI GAWTC 3 cut(s) 559, 668, 835
PshBI ATTAAT 1 cut(s) 789
PsiI TTATAA 2 cut(s) 357, 821
PspEI GGTNACC 2 cut(s) 137, 386
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 1 cut(s) 628
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 2 cut(s) 10, 396
RsaNI GTAC 2 cut(s) 9, 395
RseI CAYNNNNRTG 1 cut(s) 451
SaqAI TTAA 3 cut(s) 524, 789, 844
Sau3AI GATC 3 cut(s) 483, 673, 701
Sau96I GGNCC 1 cut(s) 628
SduI GDGCHC 1 cut(s) 473
SetI ASST 9 cut(s) 76, 128, 144, 228, 393, 446, 524, 622, 728
SfaNI GCATC 3 cut(s) 35, 97, 323
SmiMI CAYNNNNRTG 1 cut(s) 451
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 9 cut(s) 169, 275, 352, 401, 463, 529, 545, 767, 781
SsiI CCGC 4 cut(s) 5, 95, 104, 329
SspI AATATT 2 cut(s) 379, 809
SspMI CTAG 4 cut(s) 509, 608, 681, 735
StyI CCWWGG 2 cut(s) 631, 734
TasI AATT 9 cut(s) 169, 275, 352, 401, 463, 529, 545, 767, 781
TfiI GAWTC 3 cut(s) 559, 668, 835
Tru1I TTAA 3 cut(s) 524, 789, 844
Tru9I TTAA 3 cut(s) 524, 789, 844
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 42, 596, 672
VspI ATTAAT 1 cut(s) 789
XapI RAATTY 2 cut(s) 767, 781
XceI RCATGY 1 cut(s) 615
XmaJI CCTAGG 1 cut(s) 734
XspI CTAG 4 cut(s) 509, 608, 681, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.