Rmu_sc0018472.1_g000003

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018472.1
OG0000698
Physical Location & Seq
Forward (+)
2638 .. 3138
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018472.1_g000003.1.cds

Sequence Viewer

Length: 501 bp
atggcatcgtccggaggatctaatgctactattactacgaatcaagttgatagatcattgaggcgtgggtcaaccaatgttggatgggactttgtggtgttggcggatccacacaacttagataaattaaagtgtaagttgtgtgggaagttagttagtggtggaatgcataggatgaagcaacacattgccaacatcaagggagatgttgccgcatgcaagaattgtttggatgtcgataaagctaaatgtatagccgcaatagaaggagcaaaaattaagagaaagcagaaggatatgcatgagaaggaagtgagggaagaagttgaagtttctcaatcacatgatgtagaagatgtagaaattgaagggccaagtttctcaagaaaaaggccgcactttcttcggcctatagacaagtttgcatcttcaatcactccttattcttcaattgatggaagcaagagaatgcgtcaacaaaacattaatgatgtcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

166

Amino Acids

18.45

Weight (kDa)

9.13

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 4 cut(s) 104, 213, 258, 395
AclWI GGATC 3 cut(s) 25, 101, 114
AgsI TTSAA 4 cut(s) 329, 368, 432, 450
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 3 cut(s) 25, 101, 114
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 3 cut(s) 371, 392, 407
AseI ATTAAT 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 371
BamHI GGATCC 1 cut(s) 106
BccI CCATC 2 cut(s) 78, 449
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 3 cut(s) 213, 258, 395
BlsI GCNGC 3 cut(s) 214, 259, 396
BmgT120I GGNCC 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 2 cut(s) 14, 434
BpuEI CTTGAG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 11
BseGI GGATG 3 cut(s) 89, 180, 238
BseMI GCAATG 1 cut(s) 186
BshFI GGCC 3 cut(s) 373, 394, 409
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 2 cut(s) 171, 474
BsnI GGCC 3 cut(s) 373, 394, 409
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 3 cut(s) 17, 53, 106
BspACI CCGC 4 cut(s) 104, 213, 258, 395
BspANI GGCC 3 cut(s) 373, 394, 409
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 3 cut(s) 25, 101, 114
BsrDI GCAATG 1 cut(s) 186
BssMI GATC 3 cut(s) 17, 53, 106
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 89, 180, 238
BstKTI GATC 3 cut(s) 20, 56, 109
BstMBI GATC 3 cut(s) 17, 53, 106
BstNSI RCATGY 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 411
BstX2I RGATCY 2 cut(s) 17, 106
BstYI RGATCY 2 cut(s) 17, 106
BsuRI GGCC 3 cut(s) 373, 394, 409
BtsCI GGATG 3 cut(s) 89, 180, 238
Cac8I GCNNGC 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 461
CviAII CATG 3 cut(s) 216, 302, 344
CviJI RGCY 5 cut(s) 245, 257, 373, 394, 409
CviKI_1 RGCY 5 cut(s) 245, 257, 373, 394, 409
DdeI CTNAG 1 cut(s) 118
DpnI GATC 3 cut(s) 19, 55, 108
DpnII GATC 3 cut(s) 17, 53, 106
EciI GGCGGA 1 cut(s) 119
EcoT22I ATGCAT 2 cut(s) 171, 303
FaeI CATG 3 cut(s) 219, 305, 347
FaiI YATR 7 cut(s) 171, 217, 254, 299, 303, 345, 413
FaqI GGGAC 1 cut(s) 101
FatI CATG 3 cut(s) 215, 301, 343
Fnu4HI GCNGC 3 cut(s) 213, 258, 395
FokI GGATG 3 cut(s) 96, 187, 245
Fsp4HI GCNGC 3 cut(s) 213, 258, 395
GluI GCNGC 3 cut(s) 213, 258, 395
HaeIII GGCC 3 cut(s) 373, 394, 409
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 461
Hin1II CATG 3 cut(s) 219, 305, 347
HincII GTYRAC 2 cut(s) 72, 476
HindII GTYRAC 2 cut(s) 72, 476
HinfI GANTC 1 cut(s) 40
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 2 cut(s) 72, 476
Hpy188III TCNNGA 2 cut(s) 12, 384
Hpy8I GTNNAC 2 cut(s) 72, 476
HpyAV CCTTC 4 cut(s) 260, 286, 301, 362
HpyCH4V TGCA 4 cut(s) 169, 219, 301, 425
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 3 cut(s) 219, 305, 347
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 3 cut(s) 17, 53, 106
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 1 cut(s) 25
LweI GCATC 2 cut(s) 14, 434
MalI GATC 3 cut(s) 19, 55, 108
MboI GATC 3 cut(s) 17, 53, 106
MboII GAAGA 5 cut(s) 332, 365, 395, 420, 438
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 2 cut(s) 17, 106
MluCI AATT 5 cut(s) 125, 223, 276, 363, 450
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 3 cut(s) 8, 54, 309
Mph1103I ATGCAT 2 cut(s) 171, 303
MroI TCCGGA 1 cut(s) 11
MseI TTAA 3 cut(s) 128, 279, 486
MspI CCGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 2 cut(s) 171, 474
NdeII GATC 3 cut(s) 17, 53, 106
NlaIII CATG 3 cut(s) 219, 305, 347
NlaIV GGNNCC 1 cut(s) 108
NsiI ATGCAT 2 cut(s) 171, 303
NspI RCATGY 1 cut(s) 219
PaeI GCATGC 1 cut(s) 219
PctI GAATGC 2 cut(s) 171, 474
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 3 cut(s) 214, 259, 396
PshBI ATTAAT 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 371
PsuI RGATCY 2 cut(s) 17, 106
SaqAI TTAA 3 cut(s) 128, 279, 486
SatI GCNGC 3 cut(s) 213, 258, 395
Sau3AI GATC 3 cut(s) 17, 53, 106
Sau96I GGNCC 1 cut(s) 371
SetI ASST 1 cut(s) 247
SfaNI GCATC 2 cut(s) 14, 434
SfcI CTRYAG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SphI GCATGC 1 cut(s) 219
Sse9I AATT 5 cut(s) 125, 223, 276, 363, 450
SsiI CCGC 4 cut(s) 104, 213, 258, 395
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 125, 223, 276, 363, 450
TauI GCSGC 3 cut(s) 215, 260, 397
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 3 cut(s) 128, 279, 486
Tru9I TTAA 3 cut(s) 128, 279, 486
TspDTI ATGAA 1 cut(s) 191
VspI ATTAAT 1 cut(s) 486
XceI RCATGY 1 cut(s) 219
Zsp2I ATGCAT 2 cut(s) 171, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.