Rmu_sc0005023.1_g000011

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005023.1
OG0000698
Physical Location & Seq
Forward (+)
63405 .. 64166
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005023.1_g000011.1.cds

Sequence Viewer

Length: 762 bp
atggcatcttccggaggatctaatgctactaatgaagtggatagatcattgaggcgtgggtcaaccgatgttggatgggactttgcggtattggcggatccacacaacttagacaagttgaagtgtaagttgtgtgggaaagtggttagtggtggaatacatcgaatgaagcaacacattgccaacatcaagggaaatgttgcctcatgcaagaattctacggatgccaataaagacagatgtatacccgcaatagagaaagcaaaacttaagagaaagcaaaaggatatgcatgagaaggaagtgagggaagaagttgaagttactcattcccatgatatagaagatgtagaaattgaagggccaagtttgtcaagaaaaaggccgcactttcttgggcctatcgacgagtttgcatcttcaatcactcccgattcttcaattgatggaagcaagaagatgcgtcaacaaaacattaatgatgcaatttggaaggaaagaacacatagtgtgcaacaatggttggctaggtgggtgtatcaagccgacattccatttcatgccattgataatgatagcttcaaaagatttgttgaagcggttggtcaatttggcccaggtcaccgacctccaactcaataccaactaagagagccattgttgaaggaagaggttgagaggacgaaaaattcactcaagaagcatgaagaagagtgggcaaagaatggttgttccattatgaccaatgcttggagtgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

253

Amino Acids

28.69

Weight (kDa)

8.21

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 750
AccI GTMKAC 1 cut(s) 244
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 5 cut(s) 86, 95, 249, 386, 599
AclWI GGATC 3 cut(s) 25, 92, 105
AcsI RAATTY 2 cut(s) 214, 688
AdeI CACNNNGTG 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 750
AflII CTTAAG 1 cut(s) 269
AgsI TTSAA 8 cut(s) 121, 320, 359, 423, 441, 583, 596, 664
AjnI CCWGG 1 cut(s) 616
AluBI AGCT 1 cut(s) 579
AluI AGCT 1 cut(s) 579
AlwI GGATC 3 cut(s) 25, 92, 105
Aor13HI TCCGGA 1 cut(s) 11
AoxI GGCC 4 cut(s) 362, 383, 398, 613
ApoI RAATTY 2 cut(s) 214, 688
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 362, 398, 614
AsuHPI GGTGA 1 cut(s) 614
BamHI GGATCC 1 cut(s) 97
BccI CCATC 2 cut(s) 69, 440
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 1 cut(s) 618
BfaI CTAG 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 386
BlsI GCNGC 1 cut(s) 387
Bme1390I CCNGG 1 cut(s) 618
BmgT120I GGNCC 3 cut(s) 362, 398, 614
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 5 cut(s) 14, 214, 425, 450, 472
BpuEI CTTGAG 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 616
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 11
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 2 cut(s) 80, 229
BseLI CCNNNNNNNGG 1 cut(s) 750
BseMI GCAATG 1 cut(s) 177
BshFI GGCC 4 cut(s) 364, 385, 400, 615
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 92
BsnI GGCC 4 cut(s) 364, 385, 400, 615
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 3 cut(s) 17, 44, 97
BspACI CCGC 5 cut(s) 86, 95, 249, 386, 599
BspANI GGCC 4 cut(s) 364, 385, 400, 615
BspEI TCCGGA 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 99
BspPI GGATC 3 cut(s) 25, 92, 105
BspTI CTTAAG 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 3 cut(s) 17, 44, 97
BssNAI GTATAC 1 cut(s) 245
Bst1107I GTATAC 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 618
Bst6I CTCTTC 2 cut(s) 663, 705
BstAFI CTTAAG 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 109, 647
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 2 cut(s) 80, 229
BstKTI GATC 3 cut(s) 20, 47, 100
BstMBI GATC 3 cut(s) 17, 44, 97
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 618
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 616
BstX2I RGATCY 2 cut(s) 17, 97
BstYI RGATCY 2 cut(s) 17, 97
BstZ17I GTATAC 1 cut(s) 245
BsuRI GGCC 4 cut(s) 364, 385, 400, 615
BtsCI GGATG 2 cut(s) 80, 229
Cfr13I GGNCC 3 cut(s) 362, 398, 614
CseI GACGC 1 cut(s) 452
CviAII CATG 5 cut(s) 207, 293, 335, 560, 704
CviJI RGCY 8 cut(s) 364, 385, 400, 527, 545, 579, 615, 655
CviKI_1 RGCY 8 cut(s) 364, 385, 400, 527, 545, 579, 615, 655
DdeI CTNAG 2 cut(s) 109, 647
DpnI GATC 3 cut(s) 19, 46, 99
DpnII GATC 3 cut(s) 17, 44, 97
DraIII CACNNNGTG 1 cut(s) 509
Eam1104I CTCTTC 2 cut(s) 663, 705
EarI CTCTTC 2 cut(s) 663, 705
EciI GGCGGA 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 616
EcoT22I ATGCAT 1 cut(s) 294
FaeI CATG 5 cut(s) 210, 296, 338, 563, 707
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 92
FatI CATG 5 cut(s) 206, 292, 334, 559, 703
FauI CCCGC 1 cut(s) 256
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 386
FokI GGATG 2 cut(s) 87, 236
Fsp4HI GCNGC 1 cut(s) 386
FspBI CTAG 1 cut(s) 528
GluI GCNGC 1 cut(s) 386
HaeIII GGCC 4 cut(s) 364, 385, 400, 615
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 452
Hin1II CATG 5 cut(s) 210, 296, 338, 563, 707
HincII GTYRAC 2 cut(s) 63, 467
HindII GTYRAC 2 cut(s) 63, 467
HinfI GANTC 1 cut(s) 434
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 63, 245, 467
Hpy188III TCNNGA 4 cut(s) 12, 375, 431, 697
Hpy8I GTNNAC 3 cut(s) 63, 245, 467
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 292, 353, 487, 658
HpyCH4V TGCA 5 cut(s) 210, 292, 416, 485, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 109, 647
Hsp92II CATG 5 cut(s) 210, 296, 338, 563, 707
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 3 cut(s) 17, 44, 97
LpnPI CCDG 3 cut(s) 25, 603, 630
LweI GCATC 5 cut(s) 14, 214, 425, 450, 472
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 3 cut(s) 322, 620, 755
MalI GATC 3 cut(s) 19, 46, 99
MboI GATC 3 cut(s) 17, 44, 97
MboII GAAGA 8 cut(s) 323, 356, 411, 429, 469, 680, 719, 722
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 17, 97
MluCI AATT 6 cut(s) 214, 354, 441, 486, 608, 688
MmeI TCCRAC 2 cut(s) 52, 656
MnlI CCTC 7 cut(s) 8, 45, 214, 300, 639, 664, 672
Mph1103I ATGCAT 1 cut(s) 294
MroI TCCGGA 1 cut(s) 11
MseI TTAA 2 cut(s) 270, 477
MslI CAYNNNNRTG 1 cut(s) 333
MspCI CTTAAG 1 cut(s) 269
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 618
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 3 cut(s) 17, 44, 97
NlaIII CATG 5 cut(s) 210, 296, 338, 563, 707
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 620, 755
NsiI ATGCAT 1 cut(s) 294
PfeI GAWTC 1 cut(s) 434
PflMI CCANNNNNTGG 1 cut(s) 750
PkrI GCNGC 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 616
PspEI GGTNACC 1 cut(s) 620
PspGI CCWGG 1 cut(s) 616
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 362, 398, 614
PsuI RGATCY 2 cut(s) 17, 97
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 2 cut(s) 270, 477
SatI GCNGC 1 cut(s) 386
Sau3AI GATC 3 cut(s) 17, 44, 97
Sau96I GGNCC 3 cut(s) 362, 398, 614
ScrFI CCNGG 1 cut(s) 618
SetI ASST 5 cut(s) 533, 581, 622, 631, 675
SfaNI GCATC 5 cut(s) 14, 214, 425, 450, 472
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 269, 695
SmoI CTYRAG 2 cut(s) 269, 695
Sse9I AATT 6 cut(s) 214, 354, 441, 486, 608, 688
SsiI CCGC 5 cut(s) 86, 95, 249, 386, 599
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 616
TaqI TCGA 2 cut(s) 163, 405
TasI AATT 6 cut(s) 214, 354, 441, 486, 608, 688
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 2 cut(s) 270, 477
Tru9I TTAA 2 cut(s) 270, 477
TseFI GTSAC 2 cut(s) 620, 755
Tsp45I GTSAC 2 cut(s) 620, 755
TspDTI ATGAA 4 cut(s) 48, 182, 548, 720
TspGWI ACGGA 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 750
Vha464I CTTAAG 1 cut(s) 269
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 2 cut(s) 214, 688
XmiI GTMKAC 1 cut(s) 244
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.