Rmu_sc0020646.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020646.1
OG0000698
Physical Location & Seq
Forward (+)
1 .. 2023
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020646.1_g000001.1.cds

Sequence Viewer

Length: 621 bp
tgcttgaaggtgtttgcccctttagtcaaggtgcttcgccttgttgatggggatagaaagccatcaatgggctttgtgtatttagaactaattataaccaaagaggagattaaaatggcattcaaagatcaagaagctcactatcgtccaatccttgacattgttgatggaaaagcccatggtcaactggatagtccattgcatttagcggattacctcttgaacccttactacacatatgccaatccaagcattgagaatgataatgtggtcatgaatgggttcttcacttgtgttgcgatattatttcccgatgacattcaaactcaaagtttggtgacaaatgtagaattgcacaagtatttgaagaaagagggtggatttggaagagctttggctaaggcgggatgcccacaaaatgatgacaattataatccatgtgggctcgatggtgaactttctccggggagggagaggttgatgtcgccggctcctgtcgtccagaggttgatgtcgccggatccttcgtccggttgtagaagaaggttgactttgccaaagcggagcctcgatctagatttggagtctctcgtcaccgtcgccggtgaagaaagccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

206

Amino Acids

22.98

Weight (kDa)

5.61

Isoelectric Point (pI)

54.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 95, 432
AciI CCGC 3 cut(s) 209, 404, 562
AclWI GGATC 2 cut(s) 515, 528
AfiI CCNNNNNNNGG 2 cut(s) 68, 530
AgsI TTSAA 5 cut(s) 7, 124, 223, 323, 367
AluBI AGCT 2 cut(s) 137, 392
AluI AGCT 2 cut(s) 137, 392
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 2 cut(s) 515, 528
Asp700I GAANNNNTTC 1 cut(s) 281
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 4 cut(s) 349, 464, 586, 617
BamHI GGATCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 447
BccI CCATC 4 cut(s) 41, 70, 161, 443
BceAI ACGGC 1 cut(s) 600
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 1 cut(s) 575
Bme1390I CCNGG 1 cut(s) 465
BmiI GGNNCC 3 cut(s) 492, 522, 566
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 178, 464
BsaWI WCCGGW 1 cut(s) 530
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 530
Bse118I RCCGGY 2 cut(s) 487, 602
Bse1I ACTGG 1 cut(s) 192
Bse3DI GCAATG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 178, 464
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 68, 530
BseMI GCAATG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 119
BsiSI CCGG 5 cut(s) 464, 488, 518, 531, 603
BslI CCNNNNNNNGG 2 cut(s) 68, 530
BsmAI GTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 3 cut(s) 127, 520, 571
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 3 cut(s) 209, 404, 562
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 3 cut(s) 492, 522, 566
BspPI GGATC 2 cut(s) 515, 528
BspQI GCTCTTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 2 cut(s) 487, 602
BsrI ACTGG 1 cut(s) 192
BssAI RCCGGY 2 cut(s) 487, 602
BssECI CCNNGG 2 cut(s) 178, 464
BssMI GATC 3 cut(s) 127, 520, 571
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 413
BstKTI GATC 3 cut(s) 130, 523, 574
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 127, 520, 571
BstSCI CCNGG 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 489
CciI TCATGA 1 cut(s) 273
Cfr10I RCCGGY 2 cut(s) 487, 602
CviAII CATG 3 cut(s) 179, 274, 438
DdeI CTNAG 1 cut(s) 399
DpnI GATC 3 cut(s) 129, 522, 573
DpnII GATC 3 cut(s) 127, 520, 571
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco130I CCWWGG 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 447
EcoT14I CCWWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 182, 277, 441
FaiI YATR 7 cut(s) 95, 180, 238, 240, 275, 432, 439
FalI AAGNNNNNCTT 2 cut(s) 535, 567
FatI CATG 3 cut(s) 178, 273, 437
FauI CCCGC 1 cut(s) 397
FauNDI CATATG 1 cut(s) 238
FokI GGATG 1 cut(s) 420
FriOI GRGCYC 1 cut(s) 447
FspBI CTAG 1 cut(s) 575
HapII CCGG 5 cut(s) 464, 488, 518, 531, 603
Hin1II CATG 3 cut(s) 182, 277, 441
HincII GTYRAC 2 cut(s) 185, 549
HindII GTYRAC 2 cut(s) 185, 549
HinfI GANTC 1 cut(s) 584
HpaII CCGG 5 cut(s) 464, 488, 518, 531, 603
HphI GGTGA 4 cut(s) 349, 464, 586, 617
Hpy166II GTNNAC 3 cut(s) 185, 455, 549
Hpy188III TCNNGA 6 cut(s) 131, 220, 274, 311, 502, 575
Hpy8I GTNNAC 3 cut(s) 185, 455, 549
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 2 cut(s) 534, 537
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4V TGCA 2 cut(s) 202, 355
HpyF3I CTNAG 1 cut(s) 399
Hsp92II CATG 3 cut(s) 182, 277, 441
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Kzo9I GATC 3 cut(s) 127, 520, 571
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 2 cut(s) 496, 564
LpnPI CCDG 8 cut(s) 173, 477, 501, 507, 515, 531, 544, 616
LweI GCATC 1 cut(s) 398
MaeI CTAG 1 cut(s) 575
MaeIII GTNAC 2 cut(s) 337, 592
MalI GATC 3 cut(s) 129, 522, 573
MboI GATC 3 cut(s) 127, 520, 571
MboII GAAGA 5 cut(s) 277, 379, 399, 552, 620
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 3 cut(s) 90, 350, 427
MlyI GAGTC 1 cut(s) 593
MnlI CCTC 7 cut(s) 97, 227, 367, 462, 468, 498, 578
MroNI GCCGGC 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 111
MspI CCGG 5 cut(s) 464, 488, 518, 531, 603
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 119
NaeI GCCGGC 1 cut(s) 489
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 1 cut(s) 178
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 127, 520, 571
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 3 cut(s) 182, 277, 441
NlaIV GGNNCC 3 cut(s) 492, 522, 566
NmuCI GTSAC 2 cut(s) 337, 592
PagI TCATGA 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 382
PctI GAATGC 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 281
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PsiI TTATAA 2 cut(s) 95, 432
PspN4I GGNNCC 3 cut(s) 492, 522, 566
PsrI GAACNNNNNNTAC 2 cut(s) 215, 247
PsuI RGATCY 1 cut(s) 520
SapI GCTCTTC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 111
Sau3AI GATC 3 cut(s) 127, 520, 571
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 447
SetI ASST 8 cut(s) 12, 33, 139, 219, 394, 479, 509, 548
SfaNI GCATC 1 cut(s) 398
SgrAI CRCCGGYG 1 cut(s) 602
Sse9I AATT 3 cut(s) 90, 350, 427
SsiI CCGC 3 cut(s) 209, 404, 562
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 598
TaqI TCGA 2 cut(s) 447, 570
TasI AATT 3 cut(s) 90, 350, 427
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 2 cut(s) 337, 592
Tsp45I GTSAC 2 cut(s) 337, 592
TspDTI ATGAA 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.