AT2G29735

X8 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000486
Physical Location & Seq
Reverse (-)
12705346 .. 12705699
354 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29735.1

Sequence Viewer

Length: 354 bp
ATGGCAAACATGTCGCCGTTTTTGATGTTCATCGGAATCCTCCTATCATCCATAATGATCAACCACCTTCCCGTAGCAAACTCAAAACAATGGTGTGTATCAATGCCGACAGCGACGTATGAGCAGCTAGAAGATAATCTCGGGTTTGCGTGCGCTAATGGAGTTGATTGTAGACCAATCCTACCAAGTGGAGCATGTTTTAAGCCCAATACTACAATAAGCCATGCTTCATACTTGATGAATTCTTATTACGCACAACATGGCCGAACCAACAATTCATGCTTTTTCTTTTTCCCAAATAGTGCCATGCTCACTTCCGAAGATCCTAGTTACAATCTGTGTATCTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

117

Amino Acids

13.04

Weight (kDa)

6.23

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 30 - 96 1.9e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 172
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 9
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 241
AspLEI GCGC 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 140
BbvI GCAGC 1 cut(s) 136
BcgI CGANNNNNNTGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 57
BfaI CTAG 2 cut(s) 128, 327
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 29
Bse8I GATNNNNATC 1 cut(s) 29
BseGI GGATG 1 cut(s) 47
BseJI GATNNNNATC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 140
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 2 cut(s) 57, 322
BspANI GGCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 317
BssMI GATC 2 cut(s) 57, 322
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 60, 325
BstMBI GATC 2 cut(s) 57, 322
BstNSI RCATGY 2 cut(s) 13, 198
BstV1I GCAGC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 155
CviAII CATG 6 cut(s) 10, 195, 224, 260, 279, 307
CviJI RGCY 4 cut(s) 127, 205, 222, 264
CviKI_1 RGCY 4 cut(s) 127, 205, 222, 264
DpnI GATC 2 cut(s) 59, 324
DpnII GATC 2 cut(s) 57, 322
EaeI YGGCCR 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 241
FaeI CATG 6 cut(s) 13, 198, 227, 263, 282, 310
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FatI CATG 6 cut(s) 9, 194, 223, 259, 278, 306
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 2 cut(s) 128, 327
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 264
HhaI GCGC 1 cut(s) 155
Hin1II CATG 6 cut(s) 13, 198, 227, 263, 282, 310
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 35, 319
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 6 cut(s) 13, 198, 227, 263, 282, 310
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 2 cut(s) 57, 322
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 2 cut(s) 128, 327
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 59, 324
MboI GATC 2 cut(s) 57, 322
MboII GAAGA 2 cut(s) 143, 332
MflI RGATCY 1 cut(s) 322
MluCI AATT 2 cut(s) 241, 274
MnlI CCTC 1 cut(s) 50
MseI TTAA 1 cut(s) 201
NdeII GATC 2 cut(s) 57, 322
NlaIII CATG 6 cut(s) 13, 198, 227, 263, 282, 310
NspI RCATGY 2 cut(s) 13, 198
PciI ACATGT 1 cut(s) 9
PfeI GAWTC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 126
PscI ACATGT 1 cut(s) 9
PsuI RGATCY 1 cut(s) 322
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 2 cut(s) 57, 322
SetI ASST 3 cut(s) 69, 119, 129
Sse9I AATT 2 cut(s) 241, 274
SspMI CTAG 2 cut(s) 128, 327
TaiI ACGT 1 cut(s) 119
TasI AATT 2 cut(s) 241, 274
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 4 cut(s) 19, 219, 254, 267
XapI RAATTY 1 cut(s) 241
XceI RCATGY 2 cut(s) 13, 198
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 2 cut(s) 128, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.