RchiOBHm_Chr5g0013341

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
9028975 .. 9030171
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29388

Sequence Viewer

Length: 249 bp
ATGATCGAGAATAAGACCTGGTGTGCTGCTAAGCCTTCAGCAACTGATTCAGAGCTCTCTGCAAACATTCAGTTTGCCTGCAACCAATTGAAGGATTGCAGGGTGATACAAGAAGGAGGCTCATCCTATGACCCCAACTCACTCATTAACCATGCCTCGGTGGTGATGAATCTTTACTATAAGGTGGTAGGCCAAAACAGCTGGAATTGTGATCGACTTCAGAGGATCTGCTCTCATCACTCAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

82

Amino Acids

9.21

Weight (kDa)

6.24

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 6 - 71 1.4e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AcuI CTGAAG 2 cut(s) 21, 203
AfiI CCNNNNNNNGG 2 cut(s) 91, 157
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 2 cut(s) 55, 201
AluI AGCT 2 cut(s) 55, 201
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 115, 175
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 19
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 157
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 91, 157
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 91, 157
BsnI GGCC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 3, 211, 225
Bsp1720I GCTNAGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 3 cut(s) 3, 211, 225
Bst2UI CCWGG 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 30, 241
BstF5I GGATG 1 cut(s) 122
BstKTI GATC 3 cut(s) 6, 214, 228
BstMBI GATC 3 cut(s) 3, 211, 225
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 13
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 44
CsiI ACCWGGT 1 cut(s) 17
CviAII CATG 1 cut(s) 152
CviJI RGCY 5 cut(s) 34, 55, 120, 192, 201
CviKI_1 RGCY 5 cut(s) 34, 55, 120, 192, 201
DdeI CTNAG 2 cut(s) 30, 241
DpnI GATC 3 cut(s) 5, 213, 227
DpnII GATC 3 cut(s) 3, 211, 225
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 2 cut(s) 21, 203
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 129, 153, 180
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 1 cut(s) 155
HinfI GANTC 2 cut(s) 47, 169
HphI GGTGA 2 cut(s) 115, 175
Hpy188I TCNGA 3 cut(s) 52, 222, 244
Hpy188III TCNNGA 1 cut(s) 7
HpyAV CCTTC 3 cut(s) 45, 85, 107
HpyCH4V TGCA 3 cut(s) 62, 81, 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 2 cut(s) 30, 241
Hsp92II CATG 1 cut(s) 155
Kzo9I GATC 3 cut(s) 3, 211, 225
LpnPI CCDG 5 cut(s) 4, 31, 85, 91, 187
Lsp1109I GCAGC 1 cut(s) 13
MabI ACCWGGT 1 cut(s) 17
MalI GATC 3 cut(s) 5, 213, 227
MboI GATC 3 cut(s) 3, 211, 225
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 86, 205
MnlI CCTC 3 cut(s) 110, 166, 216
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 3 cut(s) 3, 211, 225
NlaIII CATG 1 cut(s) 155
PfeI GAWTC 2 cut(s) 47, 169
PkrI GCNGC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 3, 211, 225
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 57
SetI ASST 4 cut(s) 20, 57, 186, 203
SexAI ACCWGGT 1 cut(s) 17
SgeI CNNG 9 cut(s) 19, 30, 31, 90, 112, 122, 164, 169, 214
Sse9I AATT 2 cut(s) 86, 205
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 2 cut(s) 6, 214
TasI AATT 2 cut(s) 86, 205
TfiI GAWTC 2 cut(s) 47, 169
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.