Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000486

Physical Location & Seq

Genomic Coordinates Reverse (-)

29808893 .. 29810029

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACAACAATAACCAAGCTCGTCCTAACCCTTTTCCTCTTTCAGCTCGTAACAACCGCCTACTCAAAGGGAAAGGGAGCTAAACCTGGTAACGAACCAAAACAAAATCATCCAGGCAAACCAAGCAATATAGCAAAACCAAATCATACCCCTAAACAAAATCAACCAAGCAAACCAAGCAATATAGCAAAGCCAAATCATACCCCTACTCCTGGAGGCAAGAAGCATAATCAACCAGGCAAACCAGACAATATAGCAAAAGCAGATCATACCCCTACTCCTGGAAGTAAGAAGTATTGTGTAGCTAGTCCAAACCTTGACTCTGAAGATAGCCAGCATACTATCGACGCTATATGTAATGAAAATAAGAATGTGGATTGTAGGCCCGTTCAAAAAGACGGAGTTTGCTACAATGTGAGTACTAAGCTTAGCGCATCTTACGCGTTGAATGCTTACTATGTGGCCCACGGCCGTGAACCTTTATCCTGCAAAGGGCAACTCACCACCGTGAACCCAAGTGAGGAGAAATGTATATTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

181

Amino Acids

19.47

Weight (kDa)

9.34

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	99 - 164	5.7e-12	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca	FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica	MD10G1265100.v1.1
prunus_persica	Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis	pycom05g26640 pycom10g22110
rosa_chinensis	RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata	RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora	Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa	Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha	Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana	Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	443
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	469
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	421
AfiI	CCNNNNNNNGG	4 cut(s)	212, 281, 492, 520
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	392, 448
AjnI	CCWGG	5 cut(s)	85, 112, 211, 235, 280
AleI	CACNNNNGTG	2 cut(s)	471, 506
AluBI	AGCT	5 cut(s)	19, 46, 80, 305, 427
AluI	AGCT	5 cut(s)	19, 46, 80, 305, 427
AoxI	GGCC	3 cut(s)	383, 462, 469
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	384, 463
AsuHPI	GGTGA	1 cut(s)	493
BceAI	ACGGC	2 cut(s)	456, 484
BciT130I	CCWGG	5 cut(s)	87, 114, 213, 237, 282
BfaI	CTAG	1 cut(s)	306
BlpI	GCTNAGC	1 cut(s)	428
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	5 cut(s)	87, 114, 213, 237, 282
BmgT120I	GGNCC	2 cut(s)	384, 463
BmrFI	CCNGG	5 cut(s)	87, 114, 213, 237, 282
BmsI	GCATC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	234
Bpu1102I	GCTNAGC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	466
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 262, 292
Bsc4I	CCNNNNNNNGG	4 cut(s)	212, 281, 492, 520
BseBI	CCWGG	5 cut(s)	87, 114, 213, 237, 282
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	4 cut(s)	212, 281, 492, 520
BseRI	GAGGAG	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	3 cut(s)	385, 464, 471
BsiEI	CGRYCG	1 cut(s)	472
BslI	CCNNNNNNNGG	4 cut(s)	212, 281, 492, 520
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	385, 464, 471
Bsp143I	GATC	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	428
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	3 cut(s)	385, 464, 471
BspFNI	CGCG	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	5 cut(s)	87, 114, 213, 237, 282
Bst4CI	ACNGT	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	2 cut(s)	423, 428
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 177, 440, 449
BstNI	CCWGG	5 cut(s)	87, 114, 213, 237, 282
BstSCI	CCNGG	5 cut(s)	85, 112, 211, 235, 280
BstUI	CGCG	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	385, 464, 471
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	335
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	384, 463
CseI	GACGC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	420
CviQI	GTAC	1 cut(s)	420
DdeI	CTNAG	2 cut(s)	423, 428
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	469
EagI	CGGCCG	1 cut(s)	469
EclXI	CGGCCG	1 cut(s)	469
Eco52I	CGGCCG	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	345
EcoRII	CCWGG	5 cut(s)	85, 112, 211, 235, 280
FokI	GGATG	1 cut(s)	96
FspBI	CTAG	1 cut(s)	306
GlaI	GCGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	385, 464, 471
HgaI	GACGC	1 cut(s)	356
HhaI	GCGC	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	1 cut(s)	320
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	476, 511
Hpy188I	TCNGA	1 cut(s)	325
Hpy8I	GTNNAC	2 cut(s)	476, 511
Hpy99I	CGWCG	1 cut(s)	350
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 177, 440, 449
HpyF3I	CTNAG	2 cut(s)	423, 428
HspAI	GCGC	1 cut(s)	432
Kzo9I	GATC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	77
LweI	GCATC	1 cut(s)	443
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	49, 89
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	338
MluI	ACGCGT	1 cut(s)	441
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	47, 209, 514
MslI	CAYNNNNRTG	2 cut(s)	471, 506
MspR9I	CCNGG	5 cut(s)	87, 114, 213, 237, 282
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	5 cut(s)	87, 114, 213, 237, 282
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	4 cut(s)	123, 177, 440, 449
NdeII	GATC	1 cut(s)	265
OliI	CACNNNNGTG	2 cut(s)	471, 506
PctI	GAATGC	1 cut(s)	454
PfoI	TCCNGGA	2 cut(s)	211, 280
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	5 cut(s)	85, 112, 211, 235, 280
PspGI	CCWGG	5 cut(s)	85, 112, 211, 235, 280
PspPI	GGNCC	2 cut(s)	384, 463
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
RseI	CAYNNNNRTG	2 cut(s)	471, 506
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	2 cut(s)	384, 463
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	5 cut(s)	87, 114, 213, 237, 282
SetI	ASST	8 cut(s)	21, 48, 82, 88, 307, 318, 429, 481
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	471, 506
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	306
StyD4I	CCNGG	5 cut(s)	85, 112, 211, 235, 280
TaaI	ACNGT	1 cut(s)	508
TaqI	TCGA	1 cut(s)	345
TatI	WGTACW	1 cut(s)	419
TspDTI	ATGAA	1 cut(s)	375
TspGWI	ACGGA	1 cut(s)	414
XspI	CTAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.