Rmu_sc0003458.1_g000006

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003458.1
OG0000486
Physical Location & Seq
Forward (+)
33776 .. 34287
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003458.1_g000006.1.cds

Sequence Viewer

Length: 285 bp
atggaaagctatgcatgcaatttcgtggattgcttttcaattcacagtggagatccatgctttgtcacctcgaacttgtttagtcgtgcatcctttgccatgaatgcttactaccaagaggaacatgattgcaaattcagtggctctggactcaaatctattaccgatccaagctatgggaactgcatttttgtaggttcagaagagatgatttctcctcaagcagctctgttaacaacaatgcctggtcctacgccaccaactttgtccccggaaagtgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

4.34

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 176
AclWI GGATC 2 cut(s) 47, 161
AcsI RAATTY 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 39
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 9, 174, 227
AluI AGCT 3 cut(s) 9, 174, 227
AlwI GGATC 2 cut(s) 47, 161
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 1 cut(s) 272
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 246, 272
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 246, 272
BmsI GCATC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 236
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 52, 166
BspPI GGATC 2 cut(s) 47, 161
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 52, 166
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 16
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 2 cut(s) 55, 169
BstMBI GATC 2 cut(s) 52, 166
BstMWI GCNNNNNNNGC 3 cut(s) 15, 95, 104
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 244, 270
BstV1I GCAGC 1 cut(s) 236
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 52, 145
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 248
CspCI CAANNNNNGTGG 4 cut(s) 121, 156, 246, 281
CviAII CATG 4 cut(s) 15, 57, 100, 125
CviJI RGCY 4 cut(s) 9, 144, 174, 227
CviKI_1 RGCY 4 cut(s) 9, 144, 174, 227
DpnI GATC 2 cut(s) 54, 168
DpnII GATC 2 cut(s) 52, 166
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 4 cut(s) 18, 60, 103, 128
FaiI YATR 6 cut(s) 12, 16, 58, 101, 126, 177
FaqI GGGAC 1 cut(s) 253
FatI CATG 4 cut(s) 14, 56, 99, 124
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
HapII CCGG 1 cut(s) 272
Hin1II CATG 4 cut(s) 18, 60, 103, 128
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 150
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 14, 18, 89, 132, 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 95, 104
Hsp92II CATG 4 cut(s) 18, 60, 103, 128
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 52, 166
LpnPI CCDG 3 cut(s) 132, 231, 258
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 54, 168
MboI GATC 2 cut(s) 52, 166
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 52
MluCI AATT 3 cut(s) 19, 39, 134
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 3 cut(s) 79, 112, 228
Mph1103I ATGCAT 1 cut(s) 16
MseI TTAA 1 cut(s) 233
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 2 cut(s) 246, 272
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 15, 95, 104
NciI CCSGG 1 cut(s) 272
NdeII GATC 2 cut(s) 52, 166
NlaIII CATG 4 cut(s) 18, 60, 103, 128
NmuCI GTSAC 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 1 cut(s) 18
PaeI GCATGC 1 cut(s) 18
PctI GAATGC 1 cut(s) 109
PflMI CCANNNNNTGG 1 cut(s) 176
PkrI GCNGC 1 cut(s) 226
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 1 cut(s) 52
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 52, 166
Sau96I GGNCC 1 cut(s) 248
SchI GAGTC 1 cut(s) 144
ScrFI CCNGG 2 cut(s) 246, 272
SetI ASST 5 cut(s) 11, 71, 176, 199, 229
SfaNI GCATC 1 cut(s) 98
SinI GGWCC 1 cut(s) 248
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
SphI GCATGC 1 cut(s) 18
Sse9I AATT 3 cut(s) 19, 39, 134
StyD4I CCNGG 2 cut(s) 244, 270
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 19, 39, 134
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 2 cut(s) 52, 145
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 2 cut(s) 52, 145
Van91I CCANNNNNTGG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.