Prupe.4G130100_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000486
Physical Location & Seq
Forward (+)
7182187 .. 7183287
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G130100.1

Sequence Viewer

Length: 333 bp
ATGGCTAAGCTAGCTCTGCCAGGTCCTGTTATTTCTCTCCTGCTTCTGTTCTTCTTCTCGGGAGGATCTGGACCTCCACTGCCACAGGAAAAGGAGGATACTTGGTGTGTGCCTAAGCCAGGAACCCCAGACTCTGCATTACAGAACATCATAAACTTCACTTGTGGAATATTAAAAGAATGCAGTGCAATACAAGAGCATGGTTCATGCTACTTTCCAAATACCCTCATAAACCATGCCCCATTTGCCATGAATCTTTCCTATAAGACCGATGGATGCTACAATTGTGATTTCAATTGCGTTGGCCTTATGGTTGTCACTAATCCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

111

Amino Acids

11.87

Weight (kDa)

5.04

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 19, 118
AluBI AGCT 2 cut(s) 10, 14
AluI AGCT 2 cut(s) 10, 14
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 2 cut(s) 26, 134
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 23, 71
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 58
AvaII GGWCC 2 cut(s) 23, 71
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 21, 120
BciVI GTATCC 1 cut(s) 91
BfaI CTAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 21, 120
Bme18I GGWCC 2 cut(s) 23, 71
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 23, 71
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 2 cut(s) 21, 120
BmsI GCATC 1 cut(s) 266
BmtI GCTAGC 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 2 cut(s) 21, 120
BseGI GGATG 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 119
BshFI GGCC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 119
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 306
BsoBI CYCGRG 1 cut(s) 58
Bsp143I GATC 1 cut(s) 65
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 124
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 73
BssMI GATC 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 21, 120
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 6, 114
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 281
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 11, 16, 245
BstNI CCWGG 2 cut(s) 21, 120
BstSCI CCNGG 2 cut(s) 19, 118
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 281
BtsI GCAGTG 2 cut(s) 77, 190
BtsIMutI CAGTG 2 cut(s) 77, 190
Cac8I GCNNGC 1 cut(s) 12
CaiI CAGNNNCTG 2 cut(s) 26, 134
Cfr13I GGNCC 2 cut(s) 23, 71
CviAII CATG 4 cut(s) 200, 207, 236, 250
CviJI RGCY 5 cut(s) 5, 10, 14, 118, 306
CviKI_1 RGCY 5 cut(s) 5, 10, 14, 118, 306
DdeI CTNAG 2 cut(s) 6, 114
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 23, 71
Eco88I CYCGRG 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 2 cut(s) 19, 118
FaeI CATG 4 cut(s) 203, 210, 239, 253
FaiI YATR 8 cut(s) 152, 201, 208, 230, 237, 251, 264, 311
FatI CATG 4 cut(s) 199, 206, 235, 249
FokI GGATG 1 cut(s) 288
FspBI CTAG 1 cut(s) 11
HaeIII GGCC 1 cut(s) 306
Hin1II CATG 4 cut(s) 203, 210, 239, 253
HinfI GANTC 2 cut(s) 131, 253
Hpy188III TCNNGA 2 cut(s) 60, 69
HpyCH4V TGCA 3 cut(s) 137, 183, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 16, 245
HpyF3I CTNAG 2 cut(s) 6, 114
Hsp92II CATG 4 cut(s) 203, 210, 239, 253
Kzo9I GATC 1 cut(s) 65
LpnPI CCDG 9 cut(s) 6, 33, 39, 53, 54, 71, 105, 132, 141
LweI GCATC 1 cut(s) 266
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 2 cut(s) 43, 46
MfeI CAATTG 2 cut(s) 283, 295
MflI RGATCY 1 cut(s) 65
MluCI AATT 2 cut(s) 283, 295
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 4 cut(s) 56, 84, 88, 236
MseI TTAA 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 21, 120
MunI CAATTG 2 cut(s) 283, 295
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 2 cut(s) 21, 120
MwoI GCNNNNNNNGC 3 cut(s) 11, 16, 245
NdeII GATC 1 cut(s) 65
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 4 cut(s) 203, 210, 239, 253
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 316
PctI GAATGC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 253
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 19, 118
PspGI CCWGG 2 cut(s) 19, 118
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 23, 71
PspPPI RGGWCCY 1 cut(s) 23
PstNI CAGNNNCTG 2 cut(s) 26, 134
PsuI RGATCY 1 cut(s) 65
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 2 cut(s) 23, 71
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 2 cut(s) 21, 120
SetI ASST 4 cut(s) 12, 16, 25, 76
SfaNI GCATC 1 cut(s) 266
SinI GGWCC 2 cut(s) 23, 71
Sse9I AATT 2 cut(s) 283, 295
SspI AATATT 1 cut(s) 171
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 19, 118
TaqII GACCGA 1 cut(s) 284
TasI AATT 2 cut(s) 283, 295
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 2 cut(s) 84, 190
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 195, 266
TspRI CASTG 2 cut(s) 84, 190
VpaK11BI GGWCC 2 cut(s) 23, 71
XagI CCTNNNNNAGG 1 cut(s) 117
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.