Rw5G009040

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000486
Physical Location & Seq
Forward (+)
9723377 .. 9725917
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009040.1

Sequence Viewer

Length: 1128 bp
ATGAATCCTCAAGTGCCGCCGTTCGAAAGTCCTCAACCCCAAGATTCAGAGCTCAGTTGCTTGCCATGTCGAGTTCCTGGTTGTGCATGCGCATCCTCTTTGGAGTTATCATTTGTCTGGGGACATATTCATATTTCACCTCTGAAGGCATTTGCACAGACTTGGTGTGTAGCCAATCCATCATTAGGTTATGATACTTCGGAAAACGTGGAAAGCTATGCATGCAATTACGTGGATTGCTCTTCGATTCACAGTGGAGATCCATGCTCTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTACTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTATAGTTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTTGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTATTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCTACCGGCATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTATACAAAAGAAAAGAGAAGGAAGGAGGTGCTGGTATGAGACTCGTAAAAAAGCACGGGAAATCTAGTGTCATTTTACAATTGATAGTTGCGTTGATAATTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCGGCGTTCTCGGAATCCCTCACAAGAAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAGTCCCAGCCACAGCCATCATGTTCAGTTACAGTATCAATTCCCTATGAGGCGGTATCAGTTCCTCTCAGTCACCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACGACGGCCAACTTGACATTGTTATTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATAATGGACAATTCTCCATTGGCAACACTATATACAAGACTGTCCATATCAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

375

Amino Acids

40.42

Weight (kDa)

6.24

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 54 - 119 5e-12 X8 domain
X8 PF07983 148 - 218 4e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 677
AccI GTMKAC 1 cut(s) 644
AccII CGCG 1 cut(s) 578
AciI CCGC 2 cut(s) 17, 953
AclWI GGATC 3 cut(s) 254, 368, 662
AcoI YGGCCR 1 cut(s) 1015
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 185, 383, 677
AflIII ACRYGT 1 cut(s) 576
AgeI ACCGGT 1 cut(s) 536
AgsI TTSAA 2 cut(s) 533, 640
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 52, 216, 381, 434, 630
AluI AGCT 5 cut(s) 52, 216, 381, 434, 630
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 721, 1059
AlwI GGATC 3 cut(s) 254, 368, 662
AoxI GGCC 1 cut(s) 1015
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 395
AsiGI ACCGGT 1 cut(s) 536
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 983
AsuC2I CCSGG 1 cut(s) 981
AsuHPI GGTGA 3 cut(s) 129, 554, 965
AsuII TTCGAA 1 cut(s) 24
AvaII GGWCC 1 cut(s) 983
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 443
BccI CCATC 2 cut(s) 187, 925
BceAI ACGGC 2 cut(s) 4, 1030
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 981
BcoDI GTCTC 2 cut(s) 721, 1059
BfaI CTAG 1 cut(s) 753
BfmI CTRYAG 1 cut(s) 520
BisI GCNGC 2 cut(s) 17, 432
BlsI GCNGC 2 cut(s) 18, 433
Bme1390I CCNGG 2 cut(s) 78, 981
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 983
BmrFI CCNGG 2 cut(s) 78, 981
BmsI GCATC 3 cut(s) 101, 305, 861
BpmI CTGGAG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 24
BpuMI CCSGG 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 1059
BsaWI WCCGGW 1 cut(s) 536
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 383, 677
Bse118I RCCGGY 3 cut(s) 536, 647, 831
BseBI CCWGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 92, 296
BseLI CCNNNNNNNGG 3 cut(s) 185, 383, 677
BseMII CTCAG 4 cut(s) 67, 428, 914, 982
BseXI GCAGC 1 cut(s) 443
BseYI CCCAGC 2 cut(s) 889, 906
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 1 cut(s) 1017
BshTI ACCGGT 1 cut(s) 536
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 4 cut(s) 537, 648, 832, 981
BslFI GGGAC 5 cut(s) 135, 257, 342, 820, 889
BslI CCNNNNNNNGG 3 cut(s) 185, 383, 677
BsmAI GTCTC 2 cut(s) 721, 1059
BsmFI GGGAC 5 cut(s) 135, 257, 342, 820, 889
BsmI GAATGC 2 cut(s) 316, 551
BsnI GGCC 1 cut(s) 1017
Bso31I GGTCTC 1 cut(s) 1059
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 3 cut(s) 259, 373, 667
BspACI CCGC 2 cut(s) 17, 953
BspANI GGCC 1 cut(s) 1017
BspCNI CTCAG 4 cut(s) 66, 429, 913, 981
BspFNI CGCG 1 cut(s) 578
BspPI GGATC 3 cut(s) 254, 368, 662
BspQI GCTCTTC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 1059
BsrFI RCCGGY 3 cut(s) 536, 647, 831
BssAI RCCGGY 3 cut(s) 536, 647, 831
BssMI GATC 3 cut(s) 259, 373, 667
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 6 cut(s) 254, 521, 811, 817, 934, 1111
Bst6I CTCTTC 1 cut(s) 247
BstAPI GCANNNNNTGC 2 cut(s) 302, 880
BstBAI YACGTR 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 4 cut(s) 62, 88, 223, 833
BstDEI CTNAG 4 cut(s) 53, 437, 900, 968
BstF5I GGATG 2 cut(s) 92, 296
BstFNI CGCG 1 cut(s) 578
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 3 cut(s) 262, 376, 670
BstMAI GTCTC 2 cut(s) 721, 1059
BstMBI GATC 3 cut(s) 259, 373, 667
BstMWI GCNNNNNNNGC 6 cut(s) 222, 302, 311, 431, 584, 880
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 3 cut(s) 90, 225, 883
BstSCI CCNGG 2 cut(s) 76, 979
BstSFI CTRYAG 1 cut(s) 520
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 611
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 1017
BtsCI GGATG 2 cut(s) 92, 296
BtsIMutI CAGTG 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 62, 88, 223, 833
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 3 cut(s) 536, 647, 831
Cfr13I GGNCC 1 cut(s) 983
CseI GACGC 1 cut(s) 567
CspAI ACCGGT 1 cut(s) 536
DdeI CTNAG 4 cut(s) 53, 437, 900, 968
DpnI GATC 3 cut(s) 261, 375, 669
DpnII GATC 3 cut(s) 259, 373, 667
EaeI YGGCCR 1 cut(s) 1015
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 1059
Eco47I GGWCC 1 cut(s) 983
Eco53kI GAGCTC 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 54
FaqI GGGAC 5 cut(s) 135, 257, 342, 820, 889
FblI GTMKAC 1 cut(s) 644
Fnu4HI GCNGC 2 cut(s) 17, 432
FokI GGATG 2 cut(s) 79, 283
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 17, 432
FspAI RTGCGCAY 1 cut(s) 91
FspBI CTAG 1 cut(s) 753
FspI TGCGCA 1 cut(s) 91
GlaI GCGC 1 cut(s) 91
GluI GCNGC 2 cut(s) 17, 432
GsaI CCCAGC 2 cut(s) 893, 910
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 1017
HapII CCGG 4 cut(s) 537, 648, 832, 981
HgaI GACGC 1 cut(s) 567
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 7 cut(s) 4, 44, 247, 357, 592, 729, 844
HpaII CCGG 4 cut(s) 537, 648, 832, 981
HphI GGTGA 3 cut(s) 129, 554, 965
Hpy166II GTNNAC 3 cut(s) 479, 517, 645
Hpy188I TCNGA 6 cut(s) 49, 144, 202, 409, 438, 843
Hpy188III TCNNGA 1 cut(s) 354
Hpy8I GTNNAC 3 cut(s) 479, 517, 645
Hpy99I CGWCG 1 cut(s) 1016
HpyAV CCTTC 4 cut(s) 139, 700, 704, 996
HpyCH4III ACNGT 6 cut(s) 254, 521, 811, 817, 934, 1111
HpyCH4IV ACGT 2 cut(s) 207, 231
HpyCH4V TGCA 9 cut(s) 86, 155, 221, 225, 296, 339, 393, 455, 874
HpyF10VI GCNNNNNNNGC 6 cut(s) 222, 302, 311, 431, 584, 880
HpyF3I CTNAG 4 cut(s) 53, 437, 900, 968
HpySE526I ACGT 2 cut(s) 207, 231
HspAI GCGC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 831
KroNI GCCGGC 1 cut(s) 833
Kzo9I GATC 3 cut(s) 259, 373, 667
LguI GCTCTTC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 3 cut(s) 101, 305, 861
MaeI CTAG 1 cut(s) 753
MaeII ACGT 2 cut(s) 207, 231
MaeIII GTNAC 3 cut(s) 811, 928, 971
MalI GATC 3 cut(s) 261, 375, 669
MboI GATC 3 cut(s) 259, 373, 667
MboII GAAGA 2 cut(s) 234, 422
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 8 cut(s) 226, 395, 528, 551, 767, 786, 939, 1079
MluI ACGCGT 1 cut(s) 576
MlyI GAGTC 2 cut(s) 351, 723
Mph1103I ATGCAT 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 831
MslI CAYNNNNRTG 2 cut(s) 566, 656
MspI CCGG 4 cut(s) 537, 648, 832, 981
MspR9I CCNGG 2 cut(s) 78, 981
MunI CAATTG 1 cut(s) 767
Mva1269I GAATGC 2 cut(s) 316, 551
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 6 cut(s) 222, 302, 311, 431, 584, 880
NaeI GCCGGC 1 cut(s) 833
NciI CCSGG 1 cut(s) 981
NdeII GATC 3 cut(s) 259, 373, 667
NgoMIV GCCGGC 1 cut(s) 831
NmuCI GTSAC 1 cut(s) 971
NsbI TGCGCA 1 cut(s) 91
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 3 cut(s) 90, 225, 883
NspV TTCGAA 1 cut(s) 24
PaeI GCATGC 2 cut(s) 90, 225
PciSI GCTCTTC 1 cut(s) 247
PctI GAATGC 2 cut(s) 316, 551
PdiI GCCGGC 1 cut(s) 833
PfeI GAWTC 5 cut(s) 4, 44, 247, 592, 844
PflMI CCANNNNNTGG 1 cut(s) 677
PinAI ACCGGT 1 cut(s) 536
PkrI GCNGC 2 cut(s) 18, 433
PleI GAGTC 2 cut(s) 351, 723
PpsI GAGTC 2 cut(s) 351, 723
Ppu21I YACGTR 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 2 cut(s) 889, 906
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 983
PsuI RGATCY 1 cut(s) 259
RseI CAYNNNNRTG 2 cut(s) 566, 656
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 247
SatI GCNGC 2 cut(s) 17, 432
Sau3AI GATC 3 cut(s) 259, 373, 667
Sau96I GGNCC 1 cut(s) 983
SchI GAGTC 2 cut(s) 351, 723
ScrFI CCNGG 2 cut(s) 78, 981
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 3 cut(s) 101, 305, 861
SfcI CTRYAG 1 cut(s) 520
SfuI TTCGAA 1 cut(s) 24
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 2 cut(s) 566, 656
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SphI GCATGC 2 cut(s) 90, 225
Sse9I AATT 8 cut(s) 226, 395, 528, 551, 767, 786, 939, 1079
SsiI CCGC 2 cut(s) 17, 953
SspMI CTAG 1 cut(s) 753
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 76, 979
TaaI ACNGT 6 cut(s) 254, 521, 811, 817, 934, 1111
TaiI ACGT 2 cut(s) 210, 234
TaqI TCGA 4 cut(s) 24, 70, 245, 278
TasI AATT 8 cut(s) 226, 395, 528, 551, 767, 786, 939, 1079
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 5 cut(s) 4, 44, 247, 592, 844
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 6 cut(s) 17, 119, 323, 503, 584, 605
TspGWI ACGGA 1 cut(s) 399
TspRI CASTG 1 cut(s) 259
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 1 cut(s) 395
XceI RCATGY 3 cut(s) 90, 225, 883
XmiI GTMKAC 1 cut(s) 644
XspI CTAG 1 cut(s) 753
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.