Prupe.4G076900_v2.0.a1

Deoxyhypusine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000486
Physical Location & Seq
Forward (+)
3749080 .. 3750408
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G076900.1

Sequence Viewer

Length: 357 bp
AAATCTTGGTGTGTGGCAAAGCCTGCAGCACCACAACATGCACTGCAGTCAGCTCTGGACTATGCCTGTAACTATGCGGATTGCAGCCCTACAAAGAAAGGAGGTTCTTGCTATGACCCAGATAGGCCAGTGCACCATGTCTCATTTGCCATGAATGCTTACTACCAGAAGATGGGAAGAAACCAATGGAATTGTCATTTGAACAATACTAGTCTCATTTCCTTGGCAGATCCAAGTTACAATCCCTGCTGCCAATTTGTGAGTGGAGGATCAGGACCTCCACTGCCACAGGAAAAGGAGGATACTTGGTGTGTGCCTAAGCCAGGAACCCAGACTATGCATTACAGAACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002682 GO:0002684 GO:0002694 GO:0002696 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006412 GO:0006417 GO:0006464 GO:0006518 GO:0006576 GO:0006595 GO:0006598 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008216 GO:0008284 GO:0008612 GO:0009056 GO:0009058 GO:0009059 GO:0009308 GO:0009310 GO:0009553 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010608 GO:0016043 GO:0016740 GO:0016765 GO:0018193 GO:0018205 GO:0019222 GO:0019538 GO:0022407 GO:0022409 GO:0022607 GO:0030155 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032944 GO:0032946 GO:0033500 GO:0034038 GO:0034248 GO:0034641 GO:0034645 GO:0036211 GO:0042102 GO:0042127 GO:0042129 GO:0042402 GO:0042592 GO:0042593 GO:0042802 GO:0043043 GO:0043170 GO:0043412 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045785 GO:0046203 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050670 GO:0050671 GO:0050789 GO:0050794 GO:0050863 GO:0050865 GO:0050867 GO:0050870 GO:0051171 GO:0051246 GO:0051249 GO:0051251 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051604 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070663 GO:0070665 GO:0071704 GO:0071840 GO:0080090 GO:0097164 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1903037 GO:1903039 GO:2000112 GO:2000765
KEGG Pathways
Metabolic & Signaling
ko00790 ko01100 ko01523 ko04974 map00790 map01100 map01523 map04974
Pfam Domains
Protein Families
DS

Protein Analysis

119

Amino Acids

13.06

Weight (kDa)

8.16

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AciI CCGC 1 cut(s) 77
AclWI GGATC 2 cut(s) 224, 277
AfiI CCNNNNNNNGG 2 cut(s) 172, 323
AgsI TTSAA 1 cut(s) 202
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 145, 218
Alw44I GTGCAC 1 cut(s) 131
AlwI GGATC 2 cut(s) 224, 277
AoxI GGCC 1 cut(s) 125
ApaLI GTGCAC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 26, 84, 249
AspS9I GGNCC 1 cut(s) 275
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 38, 96, 236
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 145, 218
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 2 cut(s) 24, 44
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 3 cut(s) 27, 85, 250
BlsI GCNGC 3 cut(s) 28, 86, 251
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 323
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 172, 323
BseNI ACTGG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 3 cut(s) 38, 96, 236
BshFI GGCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 172, 323
BsmAI GTCTC 2 cut(s) 145, 218
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 229, 269
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 328
BspMAI CTGCAG 2 cut(s) 28, 48
BspPI GGATC 2 cut(s) 224, 277
BsrI ACTGG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 2 cut(s) 229, 269
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 318
BstENI CCTNNNNNAGG 1 cut(s) 321
BstKTI GATC 2 cut(s) 232, 272
BstMAI GTCTC 2 cut(s) 145, 218
BstMBI GATC 2 cut(s) 229, 269
BstMWI GCNNNNNNNGC 2 cut(s) 23, 155
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 2 cut(s) 24, 44
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 38, 96, 236
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 1 cut(s) 127
BtsI GCAGTG 2 cut(s) 41, 281
BtsIMutI CAGTG 3 cut(s) 41, 135, 281
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 275
CviAII CATG 3 cut(s) 38, 137, 151
CviJI RGCY 5 cut(s) 22, 53, 87, 127, 322
CviKI_1 RGCY 5 cut(s) 22, 53, 87, 127, 322
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 231, 271
DpnII GATC 2 cut(s) 229, 269
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 342
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 41, 140, 154
FaiI YATR 8 cut(s) 39, 63, 75, 114, 138, 152, 338, 355
FatI CATG 3 cut(s) 37, 136, 150
Fnu4HI GCNGC 3 cut(s) 27, 85, 250
Fsp4HI GCNGC 3 cut(s) 27, 85, 250
FspBI CTAG 1 cut(s) 210
GluI GCNGC 3 cut(s) 27, 85, 250
HaeIII GGCC 1 cut(s) 127
Hin1II CATG 3 cut(s) 41, 140, 154
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 56, 273
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4V TGCA 6 cut(s) 26, 41, 46, 84, 133, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 155
HpyF3I CTNAG 1 cut(s) 318
Hsp92II CATG 3 cut(s) 41, 140, 154
Kzo9I GATC 2 cut(s) 229, 269
Lsp1109I GCAGC 3 cut(s) 38, 96, 236
MaeI CTAG 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 68, 236
MalI GATC 2 cut(s) 231, 271
MboI GATC 2 cut(s) 229, 269
MboII GAAGA 2 cut(s) 181, 189
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 190, 254
MnlI CCTC 4 cut(s) 95, 260, 288, 292
Mph1103I ATGCAT 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 2 cut(s) 23, 155
NdeII GATC 2 cut(s) 229, 269
NlaIII CATG 3 cut(s) 41, 140, 154
NlaIV GGNNCC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 342
NspI RCATGY 1 cut(s) 41
PctI GAATGC 1 cut(s) 160
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 3 cut(s) 28, 86, 251
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PstI CTGCAG 2 cut(s) 28, 48
PsuI RGATCY 1 cut(s) 229
SatI GCNGC 3 cut(s) 27, 85, 250
Sau3AI GATC 2 cut(s) 229, 269
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 1 cut(s) 135
SetI ASST 3 cut(s) 55, 106, 280
SfcI CTRYAG 2 cut(s) 24, 44
SinI GGWCC 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 2 cut(s) 190, 254
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 222
TasI AATT 2 cut(s) 190, 254
TscAI CASTG 3 cut(s) 48, 135, 288
TseI GCWGC 3 cut(s) 26, 84, 249
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 3 cut(s) 48, 135, 288
Van91I CCANNNNNTGG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 321
XceI RCATGY 1 cut(s) 41
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XspI CTAG 1 cut(s) 210
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.