Rh5AG103700

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000486
Physical Location & Seq
Forward (+)
9538836 .. 9539838
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG103700.1

Sequence Viewer

Length: 186 bp
ATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGGTTTTGGAACTTGTTTGTACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

61

Amino Acids

6.57

Weight (kDa)

5.64

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 77
AluBI AGCT 2 cut(s) 75, 128
AluI AGCT 2 cut(s) 75, 128
AlwI GGATC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 89
BbvI GCAGC 1 cut(s) 137
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 137
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 36
BsmI GAATGC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 67
BspPI GGATC 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 149
BssMI GATC 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 149
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 150
CviAII CATG 1 cut(s) 26
CviJI RGCY 3 cut(s) 45, 75, 128
CviKI_1 RGCY 3 cut(s) 45, 75, 128
CviQI GTAC 1 cut(s) 150
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
FaeI CATG 1 cut(s) 29
FaiI YATR 1 cut(s) 27
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 105
Hin1II CATG 1 cut(s) 29
HinfI GANTC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 159, 163
HpyCH4V TGCA 2 cut(s) 33, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 5, 33, 116, 135, 164
Lsp1109I GCAGC 1 cut(s) 137
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 89
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 1 cut(s) 67
NlaIII CATG 1 cut(s) 29
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 45
SetI ASST 4 cut(s) 77, 100, 130, 177
SgeI CNNG 7 cut(s) 32, 38, 60, 84, 134, 143, 155
Sse9I AATT 1 cut(s) 89
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 149
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 93
XapI RAATTY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.