Rw5G009050

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000486
Physical Location & Seq
Forward (+)
9738939 .. 9739598
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009050.1

Sequence Viewer

Length: 369 bp
ATGGCTCAATCAAGGAGTGCTTTATCTATTTCTATTCTGTTCCTTCTGCTCTTGTTCATCCACTTTCCTGGAGGGCCTATAAAGGTTGTTAGTGAGGATGAGAATAAGACCTGGTGTGTTGCTAAGCCTTCAGCAACTGATTCAGAGCTCTCTGCAAACATTCAGTTTGCCTGCAACCAATTGAAGGATTGCAAGGTGATACAAGAAGGAGGCTCATGCTATAACCCCAACTCACTCATTAACCATGCCTCAGTGGTGATGAATCTTTACTATAAAGCGGTAGGCCAAAACAGCTGGAATTGTGACTTCAGAGGATCTGCTCTCATCACTCAGACTAATCCAAGTTATGGTAATTGCAAGTATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

7.58

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 37 - 107 5.5e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 347
AciI CCGC 1 cut(s) 278
AclWI GGATC 1 cut(s) 322
AcuI CTGAAG 2 cut(s) 114, 292
AfiI CCNNNNNNNGG 2 cut(s) 184, 347
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 2 cut(s) 67, 110
AluBI AGCT 2 cut(s) 148, 294
AluI AGCT 2 cut(s) 148, 294
Alw21I GWGCWC 1 cut(s) 150
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 2 cut(s) 74, 283
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 208, 268
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 69, 112
BlpI GCTNAGC 1 cut(s) 123
Bme1390I CCNGG 2 cut(s) 69, 112
BmgT120I GGNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 69, 112
BpmI CTGGAG 1 cut(s) 90
Bpu1102I GCTNAGC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 347
BseBI CCWGG 2 cut(s) 69, 112
BseGI GGATG 2 cut(s) 57, 103
BseLI CCNNNNNNNGG 2 cut(s) 184, 347
BseMII CTCAG 2 cut(s) 264, 344
BshFI GGCC 2 cut(s) 76, 285
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 184, 347
BsnI GGCC 2 cut(s) 76, 285
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 314
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 1 cut(s) 278
BspANI GGCC 2 cut(s) 76, 285
BspCNI CTCAG 2 cut(s) 263, 343
BspPI GGATC 1 cut(s) 322
BssMI GATC 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 69, 112
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 123, 250, 330
BstF5I GGATG 2 cut(s) 57, 103
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 69, 112
BstSCI CCNGG 2 cut(s) 67, 110
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 68
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 2 cut(s) 76, 285
BtsCI GGATG 2 cut(s) 57, 103
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 74
CsiI ACCWGGT 1 cut(s) 110
CviAII CATG 2 cut(s) 216, 245
CviJI RGCY 7 cut(s) 5, 76, 127, 148, 213, 285, 294
CviKI_1 RGCY 7 cut(s) 5, 76, 127, 148, 213, 285, 294
DdeI CTNAG 3 cut(s) 123, 250, 330
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 114, 292
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 67, 110
EcoT22I ATGCAT 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 219, 248
FaiI YATR 8 cut(s) 80, 217, 222, 246, 273, 348, 363, 367
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 2 cut(s) 215, 244
FokI GGATG 2 cut(s) 44, 110
FriOI GRGCYC 1 cut(s) 150
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 2 cut(s) 76, 285
Hin1II CATG 2 cut(s) 219, 248
HinfI GANTC 2 cut(s) 140, 262
HphI GGTGA 2 cut(s) 208, 268
Hpy188I TCNGA 3 cut(s) 145, 311, 333
HpyAV CCTTC 4 cut(s) 53, 138, 178, 200
HpyCH4V TGCA 5 cut(s) 155, 174, 192, 357, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 3 cut(s) 123, 250, 330
Hsp92II CATG 2 cut(s) 219, 248
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 54, 81, 97, 124, 184, 280
MabI ACCWGGT 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 302
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 179, 298, 352
MnlI CCTC 5 cut(s) 65, 88, 203, 259, 305
Mph1103I ATGCAT 1 cut(s) 367
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 294
MspR9I CCNGG 2 cut(s) 69, 112
MunI CAATTG 1 cut(s) 179
MvaI CCWGG 2 cut(s) 69, 112
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 1 cut(s) 314
NlaIII CATG 2 cut(s) 219, 248
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 1 cut(s) 367
PfeI GAWTC 2 cut(s) 140, 262
PflMI CCANNNNNTGG 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 67, 110
PspGI CCWGG 2 cut(s) 67, 110
PspPI GGNCC 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 294
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 69, 112
SduI GDGCHC 1 cut(s) 150
SetI ASST 5 cut(s) 87, 113, 150, 198, 296
SexAI ACCWGGT 1 cut(s) 110
Sse9I AATT 3 cut(s) 179, 298, 352
SsiI CCGC 1 cut(s) 278
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 2 cut(s) 67, 110
TasI AATT 3 cut(s) 179, 298, 352
TfiI GAWTC 2 cut(s) 140, 262
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 258
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 46, 275
TspRI CASTG 1 cut(s) 258
Van91I CCANNNNNTGG 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.