RLG00000032004

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10138985 .. 10141409
2425 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032004

Sequence Viewer

Length: 861 bp
ATGGTGTTTCATAATTTCATATATCAGCTTGATGTAAGCTTCAAAAGAGCAGACAACACCTCATTAACGATAGGTCGCTCCTCGGGATTTTGGTTGGTGCAAAACAAGGCTAGCTTGAGCAGGTCTTTTGCACTTGCCTCCTGTTCCTTGGAGATATTTGAAGTTAGCAATGGGTCCAGAACTTCAAGAAGTGAATCTGATCCATTTGCAAGGGCTTTCTCCACTAGTCGGTGCAAGCTCATTGGCAGCCCATTCTCTTCCATGAGTCCTGTTGGCCTTTGTCTTGTCAGTAACTCCATCACTAGCTATTACACCAAAGCTGAACACGTCTACCTTGGTTGTGATTTTCCTCATGTATGCAAACTCTGCAGACATACCCTGAATGCAGGTTCCCGTTCTTCATGTATTCCAGAACCAAGGCCTTTAATTTCGGTGTATGTGAAGACATGGTGCATCGCAAAGCCTTCAACGAGCCAGGGGAGGCACTACTGGAACTGTGACTTCGGCAGCTCTGGTCTCATTTCCTTGACAGATCCAAGTTATGGTAATTGCACATATGAAGGGGGAGAGACAGCGATGGATGACTCAAATTGGGGCAACTGGTGTGTAGCAAGCCCTTCAGCAAGTGATGATCAGCTACAAGCGAACATTGAGTTTGCTTGTGGCAAGGTTGACTGTAGCATTATAAGGTCTGGTGGAGCCTGTTTCGAGCCAAACACTGTCAAGAACCGCACCTCAATTGCCGTGAATCTTTGCTATCACCAAACAGGTCAAGCAGATACGAGTTGTGATTTTAATGGCAGTGGTAACATTGTTAGAACCGATCCAAGTTATGGAGATTGCAAATTCAAGGGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

287

Amino Acids

31.14

Weight (kDa)

7.43

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 201 - 269 2.5e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
Acc36I ACCTGC 2 cut(s) 111, 377
AccB7I CCANNNNNTGG 2 cut(s) 542, 833
AccI GTMKAC 1 cut(s) 330
AciI CCGC 1 cut(s) 730
AclWI GGATC 3 cut(s) 194, 527, 818
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 1 cut(s) 603
AfiI CCNNNNNNNGG 3 cut(s) 228, 542, 833
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 5 cut(s) 43, 161, 186, 468, 850
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 9 cut(s) 28, 39, 114, 238, 306, 320, 510, 637, 858
AluI AGCT 9 cut(s) 28, 39, 114, 238, 306, 320, 510, 637, 858
Alw26I GTCTC 2 cut(s) 521, 563
AlwI GGATC 3 cut(s) 194, 527, 818
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 2 cut(s) 274, 419
ApeKI GCWGC 2 cut(s) 246, 507
ApoI RAATTY 1 cut(s) 845
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 1 cut(s) 752
AsuNHI GCTAGC 1 cut(s) 110
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 258, 519
BccI CCATC 2 cut(s) 305, 571
BceAI ACGGC 1 cut(s) 728
BciT130I CCWGG 1 cut(s) 476
BclI TGATCA 1 cut(s) 631
BcoDI GTCTC 2 cut(s) 521, 563
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 111, 225, 303
BfmI CTRYAG 2 cut(s) 367, 676
BfuAI ACCTGC 2 cut(s) 111, 377
BisI GCNGC 2 cut(s) 247, 508
BlsI GCNGC 2 cut(s) 248, 509
Bme1390I CCNGG 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 3 cut(s) 175, 391, 700
BmrFI CCNGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 462
BmtI GCTAGC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 449
BpuEI CTTGAG 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 5 cut(s) 81, 147, 334, 416, 475
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 542, 833
Bse1I ACTGG 2 cut(s) 494, 605
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 5 cut(s) 81, 147, 334, 416, 475
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 3 cut(s) 228, 542, 833
BseMI GCAATG 1 cut(s) 175
BseNI ACTGG 2 cut(s) 494, 605
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 258, 519
BshFI GGCC 2 cut(s) 276, 421
BsiHKCI CYCGRG 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 228, 542, 833
BsmAI GTCTC 2 cut(s) 521, 563
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 2 cut(s) 276, 421
Bso31I GGTCTC 1 cut(s) 521
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 4 cut(s) 199, 532, 631, 823
BspACI CCGC 1 cut(s) 730
BspANI GGCC 2 cut(s) 276, 421
BspLI GGNNCC 3 cut(s) 175, 391, 700
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 2 cut(s) 111, 377
BspOI GCTAGC 1 cut(s) 114
BspPI GGATC 3 cut(s) 194, 527, 818
BspTNI GGTCTC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 494, 605
BssECI CCNNGG 5 cut(s) 81, 147, 334, 416, 475
BssMI GATC 4 cut(s) 199, 532, 631, 823
BssT1I CCWWGG 3 cut(s) 147, 334, 416
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 3 cut(s) 497, 677, 721
Bst6I CTCTTC 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 366
BstC8I GCNNGC 3 cut(s) 112, 236, 613
BstF5I GGATG 1 cut(s) 586
BstKTI GATC 4 cut(s) 202, 535, 634, 826
BstMAI GTCTC 2 cut(s) 521, 563
BstMBI GATC 4 cut(s) 199, 532, 631, 823
BstMWI GCNNNNNNNGC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 476
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 2 cut(s) 367, 676
BstV1I GCAGC 2 cut(s) 258, 519
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 2 cut(s) 276, 421
BtgZI GCGATG 2 cut(s) 439, 590
BtrI CACGTC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 586
BtsI GCAGTG 1 cut(s) 808
BtsIMutI CAGTG 2 cut(s) 717, 808
BveI ACCTGC 2 cut(s) 111, 377
Cac8I GCNNGC 3 cut(s) 112, 236, 613
Cfr13I GGNCC 1 cut(s) 174
CviAII CATG 4 cut(s) 262, 353, 402, 447
DpnI GATC 4 cut(s) 201, 534, 633, 825
DpnII GATC 4 cut(s) 199, 532, 631, 823
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Eco130I CCWWGG 3 cut(s) 147, 334, 416
Eco147I AGGCCT 1 cut(s) 421
Eco31I GGTCTC 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 3 cut(s) 147, 334, 416
ErhI CCWWGG 3 cut(s) 147, 334, 416
FaeI CATG 4 cut(s) 265, 356, 405, 450
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 4 cut(s) 261, 352, 401, 446
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 631
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 2 cut(s) 247, 508
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 2 cut(s) 247, 508
FspBI CTAG 3 cut(s) 111, 225, 303
GluI GCNGC 2 cut(s) 247, 508
HaeIII GGCC 2 cut(s) 276, 421
Hin1II CATG 4 cut(s) 265, 356, 405, 450
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 4 cut(s) 194, 265, 584, 748
HphI GGTGA 1 cut(s) 752
Hpy166II GTNNAC 2 cut(s) 331, 673
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 84, 177, 186, 410, 724
Hpy8I GTNNAC 2 cut(s) 331, 673
HpyAV CCTTC 3 cut(s) 474, 554, 627
HpyCH4III ACNGT 3 cut(s) 497, 677, 721
HpyCH4IV ACGT 1 cut(s) 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 4 cut(s) 265, 356, 405, 450
Ksp22I TGATCA 1 cut(s) 631
Kzo9I GATC 4 cut(s) 199, 532, 631, 823
LmnI GCTCC 2 cut(s) 83, 698
Lsp1109I GCAGC 2 cut(s) 258, 519
LweI GCATC 1 cut(s) 462
MaeI CTAG 3 cut(s) 111, 225, 303
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 290, 497, 806
MalI GATC 4 cut(s) 201, 534, 633, 825
MboI GATC 4 cut(s) 199, 532, 631, 823
MboII GAAGA 3 cut(s) 249, 390, 454
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 1 cut(s) 532
MluCI AATT 6 cut(s) 13, 426, 547, 589, 738, 845
MlyI GAGTC 2 cut(s) 274, 578
MnlI CCTC 6 cut(s) 70, 91, 148, 360, 474, 745
MseI TTAA 3 cut(s) 65, 425, 795
MspR9I CCNGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 366
NdeI CATATG 1 cut(s) 556
NdeII GATC 4 cut(s) 199, 532, 631, 823
NheI GCTAGC 1 cut(s) 110
NlaIII CATG 4 cut(s) 265, 356, 405, 450
NlaIV GGNNCC 3 cut(s) 175, 391, 700
NmuCI GTSAC 1 cut(s) 497
PceI AGGCCT 1 cut(s) 421
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 2 cut(s) 194, 748
PflMI CCANNNNNTGG 2 cut(s) 542, 833
PkrI GCNGC 2 cut(s) 248, 509
PleI GAGTC 2 cut(s) 273, 578
PpsI GAGTC 2 cut(s) 273, 578
PsiI TTATAA 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 175, 391, 700
PspPI GGNCC 1 cut(s) 174
PstI CTGCAG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 532
SaqAI TTAA 3 cut(s) 65, 425, 795
SatI GCNGC 2 cut(s) 247, 508
Sau3AI GATC 4 cut(s) 199, 532, 631, 823
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 2 cut(s) 274, 578
ScrFI CCNGG 1 cut(s) 476
SfaNI GCATC 1 cut(s) 462
SfcI CTRYAG 2 cut(s) 367, 676
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 6 cut(s) 13, 426, 547, 589, 738, 845
SseBI AGGCCT 1 cut(s) 421
SsiI CCGC 1 cut(s) 730
SspMI CTAG 3 cut(s) 111, 225, 303
StuI AGGCCT 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 3 cut(s) 147, 334, 416
TaaI ACNGT 3 cut(s) 497, 677, 721
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 708
TasI AATT 6 cut(s) 13, 426, 547, 589, 738, 845
TfiI GAWTC 2 cut(s) 194, 748
Tru1I TTAA 3 cut(s) 65, 425, 795
Tru9I TTAA 3 cut(s) 65, 425, 795
TscAI CASTG 2 cut(s) 724, 808
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 246, 507
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 7, 390, 573
TspRI CASTG 2 cut(s) 724, 808
Van91I CCANNNNNTGG 2 cut(s) 542, 833
VpaK11BI GGWCC 1 cut(s) 174
XapI RAATTY 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 3 cut(s) 111, 225, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.