Rroxscaffold_1G00063210

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000486
Physical Location & Seq
Reverse (-)
85167486 .. 85170448
2963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063210.1

Sequence Viewer

Length: 471 bp
ATGAAGCCTCAAGTGCCACCGTTCGAAAGTCCTCAACCCCAAGACTTGCTGGGAACACACAAGATTCACAGCTCAGCCAATCCATCATTAGGTTATGATACTTCGGAAAACGTGGAAAGCTATGCATGCAATTACGTGGATTGCTCTTCAATTCACGGTGGAGATCCATGCTCTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAACGGGAACATGATTGCACATTTGGTGGCTCGGACTCAAATCTATTACCGATCCAAAGTAAATGGTGTATTGCAAAGCCAACTGCCCCCGACAGTTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACCGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCGTACACTATAATGAACCACGCGTACGTTGCCATGAATCTTTACTACCAATCACTTGGCGAACAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

4.79

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 30 - 86 2.9e-09 X8 domain
X8 PF07983 96 - 153 3.3e-11 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 422
AclWI GGATC 2 cut(s) 158, 271
AfaI GTAC 2 cut(s) 404, 425
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 2 cut(s) 150, 377
AluBI AGCT 2 cut(s) 72, 120
AluI AGCT 2 cut(s) 72, 120
AlwI GGATC 2 cut(s) 158, 271
AsiGI ACCGGT 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 398
AsuII TTCGAA 1 cut(s) 24
BccI CCATC 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 73
Bpu14I TTCGAA 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse118I RCCGGY 1 cut(s) 380
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 87
BseYI CCCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 364
BshTI ACCGGT 1 cut(s) 380
BsiEI CGRYCG 1 cut(s) 364
BsiSI CCGG 1 cut(s) 381
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 2 cut(s) 220, 395
Bsp119I TTCGAA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 163, 276
Bsp1720I GCTNAGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 86
BspFNI CGCG 1 cut(s) 422
BspPI GGATC 2 cut(s) 158, 271
BspQI GCTCTTC 1 cut(s) 151
BspT104I TTCGAA 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssMI GATC 2 cut(s) 163, 276
Bst4CI ACNGT 5 cut(s) 21, 158, 320, 365, 402
Bst6I CTCTTC 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 73
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 2 cut(s) 166, 279
BstMBI GATC 2 cut(s) 163, 276
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 5 cut(s) 13, 126, 206, 215, 428
BstNSI RCATGY 1 cut(s) 129
BstUI CGCG 1 cut(s) 422
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 163
BtsCI GGATG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 380
Csp6I GTAC 2 cut(s) 403, 424
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 5 cut(s) 126, 168, 211, 236, 433
CviJI RGCY 6 cut(s) 7, 72, 77, 120, 255, 304
CviKI_1 RGCY 6 cut(s) 7, 72, 77, 120, 255, 304
CviQI GTAC 2 cut(s) 403, 424
DdeI CTNAG 1 cut(s) 73
DpnI GATC 2 cut(s) 165, 278
DpnII GATC 2 cut(s) 163, 276
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 127
FaeI CATG 5 cut(s) 129, 171, 214, 239, 436
FaiI YATR 8 cut(s) 96, 123, 127, 169, 212, 237, 410, 434
FaqI GGGAC 1 cut(s) 161
FatI CATG 5 cut(s) 125, 167, 210, 235, 432
FblI GTMKAC 1 cut(s) 360
FokI GGATG 1 cut(s) 187
GsaI CCCAGC 1 cut(s) 53
HapII CCGG 1 cut(s) 381
Hin1II CATG 5 cut(s) 129, 171, 214, 239, 436
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 3 cut(s) 64, 260, 436
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 3 cut(s) 323, 361, 405
Hpy188I TCNGA 2 cut(s) 106, 259
Hpy8I GTNNAC 3 cut(s) 323, 361, 405
HpyCH4III ACNGT 5 cut(s) 21, 158, 320, 365, 402
HpyCH4IV ACGT 3 cut(s) 111, 135, 426
HpyCH4V TGCA 5 cut(s) 125, 129, 200, 243, 299
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 126, 206, 215, 428
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 3 cut(s) 111, 135, 426
Hsp92II CATG 5 cut(s) 129, 171, 214, 239, 436
Kzo9I GATC 2 cut(s) 163, 276
LguI GCTCTTC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 35, 394
LweI GCATC 1 cut(s) 209
MaeII ACGT 3 cut(s) 111, 135, 426
MalI GATC 2 cut(s) 165, 278
MboI GATC 2 cut(s) 163, 276
MboII GAAGA 1 cut(s) 138
MflI RGATCY 1 cut(s) 163
MluCI AATT 4 cut(s) 130, 150, 372, 395
MluI ACGCGT 1 cut(s) 420
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 3 cut(s) 18, 42, 190
Mph1103I ATGCAT 1 cut(s) 127
MslI CAYNNNNRTG 1 cut(s) 410
MspI CCGG 1 cut(s) 381
Mva1269I GAATGC 2 cut(s) 220, 395
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 5 cut(s) 13, 126, 206, 215, 428
NdeII GATC 2 cut(s) 163, 276
NlaIII CATG 5 cut(s) 129, 171, 214, 239, 436
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 24
PaeI GCATGC 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 2 cut(s) 220, 395
PfeI GAWTC 2 cut(s) 64, 436
Pfl23II CGTACG 1 cut(s) 423
PinAI ACCGGT 1 cut(s) 380
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 49
PspLI CGTACG 1 cut(s) 423
PsrI GAACNNNNNNTAC 2 cut(s) 407, 439
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 2 cut(s) 404, 425
RsaNI GTAC 2 cut(s) 403, 424
RseI CAYNNNNRTG 1 cut(s) 410
SalI GTCGAC 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 151
Sau3AI GATC 2 cut(s) 163, 276
SchI GAGTC 1 cut(s) 254
SetI ASST 6 cut(s) 74, 94, 114, 122, 138, 429
SfaNI GCATC 1 cut(s) 209
SfuI TTCGAA 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
SphI GCATGC 1 cut(s) 129
Sse9I AATT 4 cut(s) 130, 150, 372, 395
TaaI ACNGT 5 cut(s) 21, 158, 320, 365, 402
TaiI ACGT 3 cut(s) 114, 138, 429
TaqI TCGA 3 cut(s) 24, 182, 360
TasI AATT 4 cut(s) 130, 150, 372, 395
TfiI GAWTC 2 cut(s) 64, 436
TspDTI ATGAA 5 cut(s) 17, 227, 347, 428, 449
XceI RCATGY 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.