RLG00000032008

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10168497 .. 10171655
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032008

Sequence Viewer

Length: 1053 bp
ATGTCGAATTCCACGCGCGTCCTCCTTGGAGTTATCATTTCTCTCGGACATATTCATATTTCGCCTTTGAAGGCATTTGCACGGACTTGGTGTGTAGCCAATCCATCATTAGTTTATGATACTCTGGAAAACATGGAAAGCTATGCATGCAATTACGTAGATTGCTCTTCAATTCAAAGCGGAGATCCATGCTCTGTCCCCTCGAACTCGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAAAAGGAACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACCGATCCAAGCTATGAAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTACAGTTTACTACAAATGAACATTGACTACGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACTGGCATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTGTACAAAAGAAAAGAGGAGGAAGGAGGTGCTGGTGTGAGTCTCGTAAAACAGCATGGAAAATCTAGTGTCATTTTAAAATTGGTAGTTCCGTTGATAATTGGTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCTGGCGTTCTCAGAATCCCTCGCAAGCAATCAGAAGTGAGATGCAACACATGCCAGCCCCAGTCCCCTCTCAGTCCCAGTCACAGCCATCATCTTCAGTGACAGAATCAGTTCCCTGTGAGGCGGTATCAGTTCCTCTCAGTCCCCCTCCCGGTCCTTCTCAAACACAACCCAATGGCCAACCTGACATTGTTGTTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATGATGGACAGTTCTCCGTTGGCAACACTACTATACACAAGACTCTCCATATCAACATAAGATATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

351

Amino Acids

37.62

Weight (kDa)

6.04

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 29 - 94 2.8e-13 X8 domain
X8 PF07983 123 - 193 9.7e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 2 cut(s) 441, 569
AccII CGCG 3 cut(s) 16, 18, 503
AciI CCGC 2 cut(s) 180, 875
AclWI GGATC 3 cut(s) 179, 293, 587
AcoI YGGCCR 1 cut(s) 928
AcsI RAATTY 2 cut(s) 7, 320
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 2 cut(s) 617, 718
AfiI CCNNNNNNNGG 2 cut(s) 602, 902
AflIII ACRYGT 1 cut(s) 501
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 5 cut(s) 70, 171, 176, 458, 565
AluBI AGCT 4 cut(s) 141, 306, 359, 555
AluI AGCT 4 cut(s) 141, 306, 359, 555
Alw26I GTCTC 2 cut(s) 659, 972
AlwI GGATC 3 cut(s) 179, 293, 587
AoxI GGCC 1 cut(s) 928
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 7, 320
AsiGI ACCGGT 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 905
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 1 cut(s) 905
BalI TGGCCA 1 cut(s) 930
BbvI GCAGC 1 cut(s) 368
BccI CCATC 3 cut(s) 112, 847, 980
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 2 cut(s) 659, 972
BfaI CTAG 1 cut(s) 678
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 1 cut(s) 905
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 2 cut(s) 806, 823
BmsI GCATC 2 cut(s) 230, 783
BmuI ACTGGG 2 cut(s) 806, 823
BpmI CTGGAG 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 903
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 972
BsaJI CCNNGG 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 902
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 3 cut(s) 577, 812, 829
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 602, 902
BseMII CTCAG 4 cut(s) 353, 776, 836, 904
BseNI ACTGG 3 cut(s) 577, 812, 829
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 3 cut(s) 16, 18, 503
BshFI GGCC 1 cut(s) 930
BshTI ACCGGT 1 cut(s) 461
BsiSI CCGG 2 cut(s) 462, 903
BslFI GGGAC 5 cut(s) 182, 748, 800, 811, 879
BslI CCNNNNNNNGG 2 cut(s) 602, 902
BsmAI GTCTC 2 cut(s) 659, 972
BsmFI GGGAC 5 cut(s) 182, 748, 800, 811, 879
BsmI GAATGC 2 cut(s) 241, 476
BsnI GGCC 1 cut(s) 930
Bso31I GGTCTC 1 cut(s) 972
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 184, 298, 592
BspACI CCGC 2 cut(s) 180, 875
BspANI GGCC 1 cut(s) 930
BspCNI CTCAG 4 cut(s) 354, 775, 835, 903
BspFNI CGCG 3 cut(s) 16, 18, 503
BspPI GGATC 3 cut(s) 179, 293, 587
BspQI GCTCTTC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 972
BsrFI RCCGGY 1 cut(s) 461
BsrGI TGTACA 1 cut(s) 615
BsrI ACTGG 3 cut(s) 577, 812, 829
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 184, 298, 592
BssT1I CCWWGG 1 cut(s) 25
Bst4CI ACNGT 5 cut(s) 401, 446, 739, 745, 993
Bst6I CTCTTC 1 cut(s) 172
BstAPI GCANNNNNTGC 2 cut(s) 227, 802
BstAUI TGTACA 1 cut(s) 615
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 4 cut(s) 148, 755, 777, 807
BstDEI CTNAG 4 cut(s) 362, 762, 822, 890
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 3 cut(s) 16, 18, 503
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 3 cut(s) 187, 301, 595
BstMAI GTCTC 2 cut(s) 659, 972
BstMBI GATC 3 cut(s) 184, 298, 592
BstMWI GCNNNNNNNGC 6 cut(s) 147, 227, 236, 356, 509, 802
BstNSI RCATGY 2 cut(s) 150, 805
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 1 cut(s) 445
BstSNI TACGTA 1 cut(s) 157
BstUI CGCG 3 cut(s) 16, 18, 503
BstV1I GCAGC 1 cut(s) 368
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 1 cut(s) 930
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 4 cut(s) 148, 755, 777, 807
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 905
CseI GACGC 2 cut(s) 7, 492
Csp6I GTAC 2 cut(s) 616, 717
CspAI ACCGGT 1 cut(s) 461
CviQI GTAC 2 cut(s) 616, 717
DdeI CTNAG 4 cut(s) 362, 762, 822, 890
DpnI GATC 3 cut(s) 186, 300, 594
DpnII GATC 3 cut(s) 184, 298, 592
DraI TTTAAA 1 cut(s) 690
EaeI YGGCCR 1 cut(s) 928
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 972
Eco47I GGWCC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 831
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 25
FaqI GGGAC 5 cut(s) 182, 748, 800, 811, 879
FblI GTMKAC 2 cut(s) 441, 569
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 930
HapII CCGG 2 cut(s) 462, 903
HgaI GACGC 2 cut(s) 7, 492
HhaI GCGC 1 cut(s) 18
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 2 cut(s) 442, 570
HindII GTYRAC 2 cut(s) 442, 570
HinfI GANTC 6 cut(s) 282, 517, 652, 766, 857, 1024
HpaII CCGG 2 cut(s) 462, 903
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 3 cut(s) 404, 442, 570
Hpy188I TCNGA 5 cut(s) 47, 334, 363, 765, 785
Hpy188III TCNNGA 2 cut(s) 125, 279
Hpy8I GTNNAC 3 cut(s) 404, 442, 570
HpyAV CCTTC 3 cut(s) 64, 629, 918
HpyCH4III ACNGT 5 cut(s) 401, 446, 739, 745, 993
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 8 cut(s) 80, 146, 150, 221, 264, 318, 380, 796
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 227, 236, 356, 509, 802
HpyF3I CTNAG 4 cut(s) 362, 762, 822, 890
HpySE526I ACGT 1 cut(s) 156
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 3 cut(s) 184, 298, 592
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 1 cut(s) 368
LweI GCATC 2 cut(s) 230, 783
MaeI CTAG 1 cut(s) 678
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 739, 831, 850
MalI GATC 3 cut(s) 186, 300, 594
MboI GATC 3 cut(s) 184, 298, 592
MboII GAAGA 3 cut(s) 159, 347, 837
MflI RGATCY 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 930
MluCI AATT 8 cut(s) 7, 151, 171, 320, 453, 476, 692, 711
MluI ACGCGT 1 cut(s) 501
MluNI TGGCCA 1 cut(s) 930
MlyI GAGTC 3 cut(s) 276, 661, 1018
Mox20I TGGCCA 1 cut(s) 930
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 861
MscI TGGCCA 1 cut(s) 930
MseI TTAA 1 cut(s) 689
MslI CAYNNNNRTG 2 cut(s) 491, 581
Msp20I TGGCCA 1 cut(s) 930
MspI CCGG 2 cut(s) 462, 903
MspR9I CCNGG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 241, 476
MvnI CGCG 3 cut(s) 16, 18, 503
MwoI GCNNNNNNNGC 6 cut(s) 147, 227, 236, 356, 509, 802
NciI CCSGG 1 cut(s) 903
NdeII GATC 3 cut(s) 184, 298, 592
NmuCI GTSAC 2 cut(s) 831, 850
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 150, 805
PaeI GCATGC 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 2 cut(s) 241, 476
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 3 cut(s) 517, 766, 857
PflMI CCANNNNNTGG 1 cut(s) 602
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 3 cut(s) 276, 660, 1018
PpsI GAGTC 3 cut(s) 276, 660, 1018
Ppu21I YACGTR 1 cut(s) 157
PspPI GGNCC 1 cut(s) 905
PsrI GAACNNNNNNTAC 2 cut(s) 407, 439
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 617, 718
RsaNI GTAC 2 cut(s) 616, 717
RseI CAYNNNNRTG 2 cut(s) 491, 581
SalI GTCGAC 2 cut(s) 440, 568
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 689
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 184, 298, 592
Sau96I GGNCC 1 cut(s) 905
SchI GAGTC 3 cut(s) 276, 661, 1018
ScrFI CCNGG 1 cut(s) 903
SetI ASST 9 cut(s) 143, 159, 308, 331, 361, 557, 643, 937, 955
SfaNI GCATC 2 cut(s) 230, 783
SfcI CTRYAG 1 cut(s) 445
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 2 cut(s) 491, 581
SnaBI TACGTA 1 cut(s) 157
SphI GCATGC 1 cut(s) 150
Sse9I AATT 8 cut(s) 7, 151, 171, 320, 453, 476, 692, 711
SsiI CCGC 2 cut(s) 180, 875
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 5 cut(s) 401, 446, 739, 745, 993
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 5, 203, 441, 569
TasI AATT 8 cut(s) 7, 151, 171, 320, 453, 476, 692, 711
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 3 cut(s) 517, 766, 857
Tru1I TTAA 1 cut(s) 689
Tru9I TTAA 1 cut(s) 689
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 2 cut(s) 831, 850
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 831, 850
TspDTI ATGAA 6 cut(s) 44, 248, 324, 428, 509, 530
TspGWI ACGGA 3 cut(s) 97, 693, 988
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 905
XapI RAATTY 2 cut(s) 7, 320
XceI RCATGY 2 cut(s) 150, 805
XmiI GTMKAC 2 cut(s) 441, 569
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 1 cut(s) 678
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.