pycom05g26640

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000486
Physical Location & Seq
Reverse (-)
27818830 .. 27819108
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g26640.1

Sequence Viewer

Length: 279 bp
ATGGTTTTTTTGGGTTTGCAGGACACTTGGTGTGTGGCTAAGCCAGGAATCCCAGACTCTGCATTGCAAGAAATCATAGACTTCAGTTGTGGAATATTGAAAGATAGCAGCAAGATACAAAAGCATGGTTCATGTTTTTTGCCAAATACAGTGATAAGCCATGCCTCAATTGCCATGAATCTTTACTATAAGGCCGACGGATACAACAACTGCGACTTCAATGGCGCTGGCCTTGTCGTTGTCGTGACGAATCCAAGTAAGCCAATTTGTTTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

93

Amino Acids

9.92

Weight (kDa)

5.99

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 9 - 77 1.8e-16 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 67
AdeI CACNNNGTG 1 cut(s) 30
AgsI TTSAA 2 cut(s) 100, 220
AjnI CCWGG 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 59
AoxI GGCC 2 cut(s) 192, 229
ApeKI GCWGC 1 cut(s) 108
AspLEI GCGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 45
BciVI GTATCC 1 cut(s) 194
BfoI RGCGCY 1 cut(s) 228
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 1 cut(s) 109
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 45
Bpu1102I GCTNAGC 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 194, 231
BsnI GGCC 2 cut(s) 194, 231
Bsp1720I GCTNAGC 1 cut(s) 39
BspANI GGCC 2 cut(s) 194, 231
BsrDI GCAATG 1 cut(s) 62
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 120
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 2 cut(s) 194, 231
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 227
CviAII CATG 4 cut(s) 125, 132, 161, 175
CviJI RGCY 6 cut(s) 38, 43, 159, 194, 231, 262
CviKI_1 RGCY 6 cut(s) 38, 43, 159, 194, 231, 262
DdeI CTNAG 1 cut(s) 39
DraIII CACNNNGTG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 4 cut(s) 128, 135, 164, 178
FaiI YATR 7 cut(s) 77, 126, 133, 162, 176, 189, 277
FatI CATG 4 cut(s) 124, 131, 160, 174
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GlaI GCGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 194, 231
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 128, 135, 164, 178
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 4 cut(s) 48, 56, 178, 250
Hpy166II GTNNAC 1 cut(s) 272
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 19, 62, 67
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 4 cut(s) 128, 135, 164, 178
HspAI GCGC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 5, 30, 57, 66, 213
Lsp1109I GCAGC 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 244
MfeI CAATTG 1 cut(s) 168
MluCI AATT 2 cut(s) 168, 264
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 170
NlaIII CATG 4 cut(s) 128, 135, 164, 178
NmuCI GTSAC 1 cut(s) 244
PfeI GAWTC 3 cut(s) 48, 178, 250
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 59
SatI GCNGC 1 cut(s) 109
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 45
Sse9I AATT 2 cut(s) 168, 264
SspI AATATT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 151
TasI AATT 2 cut(s) 168, 264
TfiI GAWTC 3 cut(s) 48, 178, 250
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 120, 191
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.