RchiOBHm_Chr5g0013291

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
8997261 .. 8998685
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29383

Sequence Viewer

Length: 759 bp
ATGCAAGACTTGGAAACGTATGCTTGCAATTATGTGGATTGCTCTTCAATTCACAATGGCGGTCCATGCTTCAACCCCTCAAACGCCTTTAGTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGCTACTTTGCAGGTAGAAAAGAGACGGTTTCCTCTTCAGCAGCTCTGAGTGCATGGTGTGTTGCAAAGCCAACGGCCACTGACAATCTTCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTTATTGAACCCCGTGGTGAATGCCAATTACCAGACGCTATAATGAACCACGCATCTGTTGCCATGAATCTTTACTATCAATCTTTTGGCAGAACAGATATGAGCTGTTATTTTCAGTCCACAGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATGAAGGGGTTTTCCCTGACAGCGAACCTGTGACTCCTGTCCATGCAAAAGGGAAAAGTAGGGCCTTTTCTGCAACATCAGTTGGAGTTATGGTGATGGGGTCGATCATTGGTTGTGCGCTGGTGGCAGTGGCTATATATGTTATGCTCTGGCTTCGTCAGCCCCGCCCGCCAGTGGTAAAGGAAGTTCACATGGACCCATTGCCACAGCCATTGTATCAACCACCAGAGCCATCAGCTTCCCCAGCTCCTGTTGAGGGTTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

252

Amino Acids

27.22

Weight (kDa)

4.97

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 2 - 46 2.3e-09 X8 domain
X8 PF07983 82 - 151 2.3e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 2 cut(s) 182, 476
AciI CCGC 3 cut(s) 60, 655, 659
AclWI GGATC 2 cut(s) 167, 461
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 4 cut(s) 182, 476, 664, 746
AgsI TTSAA 5 cut(s) 48, 73, 289, 332, 464
AluBI AGCT 5 cut(s) 180, 233, 429, 728, 737
AluI AGCT 5 cut(s) 180, 233, 429, 728, 737
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 167, 461
AlwNI CAGNNNCTG 1 cut(s) 740
AoxI GGCC 2 cut(s) 264, 552
ApeKI GCWGC 2 cut(s) 98, 230
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 3 cut(s) 62, 552, 685
AsuHPI GGTGA 2 cut(s) 353, 595
AvaII GGWCC 2 cut(s) 62, 685
BbvI GCAGC 2 cut(s) 110, 242
BccI CCATC 2 cut(s) 580, 730
BceAI ACGGC 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 319
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 99, 231
BlsI GCNGC 2 cut(s) 100, 232
Bme18I GGWCC 2 cut(s) 62, 685
BmgT120I GGNCC 3 cut(s) 62, 552, 685
BmiI GGNNCC 1 cut(s) 687
BmsI GCATC 1 cut(s) 386
BoxI GACNNNNGTC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 182, 476, 664, 746
Bse1I ACTGG 2 cut(s) 136, 662
Bse3DI GCAATG 1 cut(s) 689
BseDI CCNNGG 1 cut(s) 337
BseLI CCNNNNNNNGG 4 cut(s) 182, 476, 664, 746
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 136, 662
BseXI GCAGC 2 cut(s) 110, 242
BseYI CCCAGC 1 cut(s) 733
BshFI GGCC 2 cut(s) 266, 554
BslI CCNNNNNNNGG 4 cut(s) 182, 476, 664, 746
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmI GAATGC 2 cut(s) 118, 350
BsnI GGCC 2 cut(s) 266, 554
Bsp143I GATC 3 cut(s) 172, 466, 594
BspACI CCGC 3 cut(s) 60, 655, 659
BspANI GGCC 2 cut(s) 266, 554
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 191
BspPI GGATC 2 cut(s) 167, 461
BspQI GCTCTTC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 689
BsrI ACTGG 2 cut(s) 136, 662
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 3 cut(s) 172, 466, 594
Bst4CI ACNGT 2 cut(s) 217, 320
Bst6I CTCTTC 2 cut(s) 49, 229
BstAPI GCANNNNNTGC 2 cut(s) 104, 383
BstC8I GCNNGC 2 cut(s) 25, 659
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 3 cut(s) 175, 469, 597
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 3 cut(s) 172, 466, 594
BstPAI GACNNNNGTC 1 cut(s) 527
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 2 cut(s) 110, 242
BstX2I RGATCY 1 cut(s) 466
BstXI CCANNNNNNTGG 2 cut(s) 143, 451
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 2 cut(s) 266, 554
BtgI CCRYGG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 4 cut(s) 143, 267, 624, 669
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 25, 659
CaiI CAGNNNCTG 1 cut(s) 740
CfoI GCGC 1 cut(s) 610
Cfr13I GGNCC 3 cut(s) 62, 552, 685
CseI GACGC 1 cut(s) 368
CspCI CAANNNNNGTGG 2 cut(s) 684, 719
CviAII CATG 9 cut(s) 66, 95, 109, 243, 311, 388, 451, 533, 682
DdeI CTNAG 1 cut(s) 236
DpnI GATC 3 cut(s) 174, 468, 596
DpnII GATC 3 cut(s) 172, 466, 594
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 49, 229
EarI CTCTTC 2 cut(s) 49, 229
Eco47I GGWCC 2 cut(s) 62, 685
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 552
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 9 cut(s) 69, 98, 112, 246, 314, 391, 454, 536, 685
FatI CATG 9 cut(s) 65, 94, 108, 242, 310, 387, 450, 532, 681
FauI CCCGC 2 cut(s) 662, 666
Fnu4HI GCNGC 2 cut(s) 99, 231
Fsp4HI GCNGC 2 cut(s) 99, 231
GlaI GCGC 1 cut(s) 609
GluI GCNGC 2 cut(s) 99, 231
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 2 cut(s) 266, 554
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 610
Hin1II CATG 9 cut(s) 69, 98, 112, 246, 314, 391, 454, 536, 685
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 156, 391, 523
HphI GGTGA 2 cut(s) 353, 595
Hpy166II GTNNAC 3 cut(s) 316, 444, 679
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 3 cut(s) 125, 153, 477
Hpy8I GTNNAC 3 cut(s) 316, 444, 679
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 217, 320
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 8 cut(s) 4, 27, 98, 200, 242, 254, 536, 563
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 9 cut(s) 69, 98, 112, 246, 314, 391, 454, 536, 685
HspAI GCGC 1 cut(s) 608
Kzo9I GATC 3 cut(s) 172, 466, 594
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 2 cut(s) 127, 742
Lsp1109I GCAGC 2 cut(s) 110, 242
LweI GCATC 1 cut(s) 386
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 146, 520
MalI GATC 3 cut(s) 174, 468, 596
MboI GATC 3 cut(s) 172, 466, 594
MboII GAAGA 4 cut(s) 36, 216, 269, 476
MfeI CAATTG 1 cut(s) 284
MflI RGATCY 1 cut(s) 466
MluCI AATT 4 cut(s) 28, 48, 284, 350
MlyI GAGTC 2 cut(s) 150, 517
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 3 cut(s) 88, 232, 739
MslI CAYNNNNRTG 2 cut(s) 449, 455
MunI CAATTG 1 cut(s) 284
Mva1269I GAATGC 2 cut(s) 118, 350
NdeII GATC 3 cut(s) 172, 466, 594
NlaIII CATG 9 cut(s) 69, 98, 112, 246, 314, 391, 454, 536, 685
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 1 cut(s) 520
PciSI GCTCTTC 1 cut(s) 49
PctI GAATGC 2 cut(s) 118, 350
PfeI GAWTC 1 cut(s) 391
PflMI CCANNNNNTGG 2 cut(s) 182, 476
PkrI GCNGC 2 cut(s) 100, 232
PleI GAGTC 2 cut(s) 150, 517
PpsI GAGTC 2 cut(s) 150, 517
PshAI GACNNNNGTC 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 733
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 3 cut(s) 62, 552, 685
PsrI GAACNNNNNNTAC 2 cut(s) 660, 692
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 1 cut(s) 466
RseI CAYNNNNRTG 2 cut(s) 449, 455
SapI GCTCTTC 1 cut(s) 49
SatI GCNGC 2 cut(s) 99, 231
Sau3AI GATC 3 cut(s) 172, 466, 594
Sau96I GGNCC 3 cut(s) 62, 552, 685
SchI GAGTC 2 cut(s) 150, 517
SetI ASST 8 cut(s) 20, 182, 205, 235, 431, 520, 730, 739
SfaNI GCATC 1 cut(s) 386
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 2 cut(s) 62, 685
SmiMI CAYNNNNRTG 2 cut(s) 449, 455
Sse9I AATT 4 cut(s) 28, 48, 284, 350
SsiI CCGC 3 cut(s) 60, 655, 659
TaaI ACNGT 2 cut(s) 217, 320
TaiI ACGT 1 cut(s) 20
TaqI TCGA 1 cut(s) 593
TasI AATT 4 cut(s) 28, 48, 284, 350
TfiI GAWTC 1 cut(s) 391
TscAI CASTG 4 cut(s) 143, 274, 624, 669
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 2 cut(s) 98, 230
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 4 cut(s) 125, 383, 404, 507
TspRI CASTG 4 cut(s) 143, 274, 624, 669
Van91I CCANNNNNTGG 2 cut(s) 182, 476
VpaK11BI GGWCC 2 cut(s) 62, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.