AT4G09462

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000486
Physical Location & Seq
Forward (+)
5996803 .. 5997270
468 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09462.1

Sequence Viewer

Length: 345 bp
ATGGCCAAAATATCATCACCTTTGGCTCTCTTATTCATCATGTTATCTTCCATCATGATCAACCATGTGGCGAGTTCCAAAACATGGTGTATAGCAACTCTAATCGCAACGAATGCGCAGCTGCAAGCAAATATTAATTTTGCATGTAGTCAAGGAGTTGATTGTAGGCCAATCCAACCTGGTGGATCTTGTTTTATCCCTAATAATCTTGCAAATCATGCATCGTTTGTGATGAACTCTTATTATCAGACTCATGGTCGTACCAATCAGGCATGTAGTTTCAAAAATACCGGAACATTTGCTGCTACCGATCCTAGTTTTGGTAAATGTGTGTATGCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

114

Amino Acids

12.21

Weight (kDa)

8.87

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 28 - 99 5.2e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 117
AccB7I CCANNNNNTGG 1 cut(s) 84
AclWI GGATC 2 cut(s) 193, 305
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 2 cut(s) 84, 320
AgsI TTSAA 1 cut(s) 283
AhdI GACNNNNNGTC 1 cut(s) 255
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
AlwI GGATC 2 cut(s) 193, 305
AoxI GGCC 2 cut(s) 3, 167
ApeKI GCWGC 3 cut(s) 118, 121, 302
AseI ATTAAT 1 cut(s) 135
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 9
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 3 cut(s) 108, 130, 289
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 180
BclI TGATCA 1 cut(s) 57
BfaI CTAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 119, 122, 303
BlsI GCNGC 3 cut(s) 120, 123, 304
Bme1390I CCNGG 1 cut(s) 180
BmeRI GACNNNNNGTC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 290
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 320
BseBI CCWGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 84, 320
BseXI GCAGC 3 cut(s) 108, 130, 289
BshFI GGCC 2 cut(s) 5, 169
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 84, 320
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 5, 169
Bsp143I GATC 3 cut(s) 57, 185, 310
BspANI GGCC 2 cut(s) 5, 169
BspHI TCATGA 1 cut(s) 54
BspPI GGATC 2 cut(s) 193, 305
BssMI GATC 3 cut(s) 57, 185, 310
Bst2UI CCWGG 1 cut(s) 180
BstAPI GCANNNNNTGC 2 cut(s) 113, 218
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 342
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 3 cut(s) 60, 188, 313
BstMBI GATC 3 cut(s) 57, 185, 310
BstMWI GCNNNNNNNGC 2 cut(s) 113, 218
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 147, 276
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 108, 130, 289
BstX2I RGATCY 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 5, 169
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 118
CseI GACGC 1 cut(s) 327
CsiI ACCWGGT 1 cut(s) 178
Csp6I GTAC 1 cut(s) 261
CviAII CATG 8 cut(s) 40, 55, 65, 84, 144, 218, 254, 273
CviJI RGCY 4 cut(s) 5, 26, 121, 169
CviKI_1 RGCY 4 cut(s) 5, 26, 121, 169
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 59, 187, 312
DpnII GATC 3 cut(s) 57, 185, 310
DriI GACNNNNNGTC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 8 cut(s) 43, 58, 68, 87, 147, 221, 257, 276
FatI CATG 8 cut(s) 39, 54, 64, 83, 143, 217, 253, 272
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 119, 122, 303
Fsp4HI GCNGC 3 cut(s) 119, 122, 303
FspBI CTAG 1 cut(s) 315
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 1 cut(s) 117
GluI GCNGC 3 cut(s) 119, 122, 303
HaeIII GGCC 2 cut(s) 5, 169
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 118
Hin1II CATG 8 cut(s) 43, 58, 68, 87, 147, 221, 257, 276
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 55
HpyCH4V TGCA 4 cut(s) 124, 143, 212, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 218
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 8 cut(s) 43, 58, 68, 87, 147, 221, 257, 276
HspAI GCGC 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 185, 310
LpnPI CCDG 4 cut(s) 165, 192, 254, 304
Lsp1109I GCAGC 3 cut(s) 108, 130, 289
LweI GCATC 1 cut(s) 230
MabI ACCWGGT 1 cut(s) 178
MaeI CTAG 1 cut(s) 315
MalI GATC 3 cut(s) 59, 187, 312
MboI GATC 3 cut(s) 57, 185, 310
MboII GAAGA 1 cut(s) 39
MflI RGATCY 1 cut(s) 185
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 199
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 118
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 113, 218
NdeII GATC 3 cut(s) 57, 185, 310
NlaIII CATG 8 cut(s) 43, 58, 68, 87, 147, 221, 257, 276
NsbI TGCGCA 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 147, 276
PagI TCATGA 1 cut(s) 54
PctI GAATGC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 84
PkrI GCNGC 3 cut(s) 120, 123, 304
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshBI ATTAAT 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 3 cut(s) 119, 122, 303
Sau3AI GATC 3 cut(s) 57, 185, 310
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 180
SetI ASST 3 cut(s) 22, 123, 181
SexAI ACCWGGT 1 cut(s) 178
SfaNI GCATC 1 cut(s) 230
Sse9I AATT 1 cut(s) 136
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 178
TasI AATT 1 cut(s) 136
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseI GCWGC 3 cut(s) 118, 121, 302
TspDTI ATGAA 2 cut(s) 25, 248
Van91I CCANNNNNTGG 1 cut(s) 84
VspI ATTAAT 1 cut(s) 135
XceI RCATGY 2 cut(s) 147, 276
XspI CTAG 1 cut(s) 315
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.