AT4G09090

X8 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000486
Physical Location & Seq
Reverse (-)
5807220 .. 5807741
522 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09090.1

Sequence Viewer

Length: 351 bp
ATGGCCAAAATATCATCACTTTTGGCACTTCTTTTCATCATTCTATCTTCCATAATGATCAACCACCTCCATGTGGCGAGTTCCACAAAATGGTGTGTAGCAAAGATGAACGCAACGAATGCGCAACTACAAGGAAATATTAATTTTGGATGTAGTGAAGGAGTTGATTGTGGGCCAATTCAACCAGGCGGATCCTGTTATATCCCTAATAGTCTTGTAAATCATGCATCATTTGTGATGAATGCTTATTATCAGAGTCATGGTCGTACCAAAAAGGCATGTAGCTTCAAAAATACTGGCACATTTGCTGTTACCGATCTCAGTTTTGGTAAATGTGTGTATGTGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

9.0

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 30 - 101 7.3e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 90
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 186, 199
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 73, 90
AgsI TTSAA 2 cut(s) 182, 289
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
AlwI GGATC 2 cut(s) 186, 199
AoxI GGCC 2 cut(s) 3, 173
AseI ATTAAT 1 cut(s) 141
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 173
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 236
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 90
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 73, 90
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 301
BshFI GGCC 2 cut(s) 5, 175
BslI CCNNNNNNNGG 2 cut(s) 73, 90
BsmI GAATGC 2 cut(s) 124, 247
BsnI GGCC 2 cut(s) 5, 175
Bsp143I GATC 3 cut(s) 57, 191, 316
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 5, 175
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 186, 199
BsrI ACTGG 1 cut(s) 301
BssMI GATC 3 cut(s) 57, 191, 316
Bst2UI CCWGG 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 3 cut(s) 60, 194, 319
BstMBI GATC 3 cut(s) 57, 191, 316
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 2 cut(s) 5, 175
BtsCI GGATG 1 cut(s) 155
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 267
CviAII CATG 4 cut(s) 71, 224, 260, 279
CviJI RGCY 3 cut(s) 5, 175, 285
CviKI_1 RGCY 3 cut(s) 5, 175, 285
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 320
DpnI GATC 3 cut(s) 59, 193, 318
DpnII GATC 3 cut(s) 57, 191, 316
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 184
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 4 cut(s) 74, 227, 263, 282
FaiI YATR 7 cut(s) 53, 72, 201, 225, 261, 280, 342
FatI CATG 4 cut(s) 70, 223, 259, 278
FbaI TGATCA 1 cut(s) 57
FokI GGATG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 1 cut(s) 123
HaeIII GGCC 2 cut(s) 5, 175
HhaI GCGC 1 cut(s) 124
Hin1II CATG 4 cut(s) 74, 227, 263, 282
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 255
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 4 cut(s) 74, 227, 263, 282
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 3 cut(s) 57, 191, 316
LpnPI CCDG 4 cut(s) 171, 198, 208, 282
LweI GCATC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 310
MalI GATC 3 cut(s) 59, 193, 318
MboI GATC 3 cut(s) 57, 191, 316
MboII GAAGA 1 cut(s) 39
MflI RGATCY 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 142, 177
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 1 cut(s) 77
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 229
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 141, 349
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 124, 247
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeII GATC 3 cut(s) 57, 191, 316
NlaIII CATG 4 cut(s) 74, 227, 263, 282
NlaIV GGNNCC 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 123
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 282
PctI GAATGC 2 cut(s) 124, 247
PflMI CCANNNNNTGG 1 cut(s) 90
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 2 cut(s) 141, 349
Sau3AI GATC 3 cut(s) 57, 191, 316
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 186
SetI ASST 2 cut(s) 69, 287
SfaNI GCATC 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 2 cut(s) 142, 177
SsiI CCGC 1 cut(s) 189
SspI AATATT 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 184
TasI AATT 2 cut(s) 142, 177
Tru1I TTAA 2 cut(s) 141, 349
Tru9I TTAA 2 cut(s) 141, 349
TspDTI ATGAA 3 cut(s) 25, 122, 254
Van91I CCANNNNNTGG 1 cut(s) 90
VspI ATTAAT 1 cut(s) 141
XceI RCATGY 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.