Prupe.4G084600_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000486
Physical Location & Seq
Reverse (-)
4139512 .. 4139766
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G084600.1

Sequence Viewer

Length: 255 bp
GATACTTGGTGTGTGCCTAAGCCAGGAACCCCAGACTCTGCATTACAGAGCATCATAAACTTCACTCGTGGAATATTAAAAGAATGCAGTGAAATACAAGAGCATGGTTCATGCTACTTTCCAAATACCCTCATAAACCATGCCTCATTTGCCATGAATCTTTCCTATAAGACCGATGGATGCTACAATTGTGATTTCAATTGCGTTGGCCTTATCGTTGTCGCTAATCCAAGTAAGCCATTTTGTTTGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

85

Amino Acids

9.26

Weight (kDa)

5.43

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 38
AoxI GGCC 1 cut(s) 208
BauI CACGAG 1 cut(s) 66
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 60, 170
Bpu10I CCTNAGC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 23
BshFI GGCC 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 23
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 1 cut(s) 210
BspANI GGCC 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 28
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 24
BstDEI CTNAG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 38
CviAII CATG 4 cut(s) 104, 111, 140, 154
CviJI RGCY 3 cut(s) 22, 210, 238
CviKI_1 RGCY 3 cut(s) 22, 210, 238
DdeI CTNAG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 4 cut(s) 107, 114, 143, 157
FaiI YATR 8 cut(s) 56, 105, 112, 134, 141, 155, 168, 253
FatI CATG 4 cut(s) 103, 110, 139, 153
FokI GGATG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 210
Hin1II CATG 4 cut(s) 107, 114, 143, 157
HinfI GANTC 2 cut(s) 35, 157
HpyCH4V TGCA 2 cut(s) 41, 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 4 cut(s) 107, 114, 143, 157
LpnPI CCDG 3 cut(s) 9, 36, 45
LweI GCATC 2 cut(s) 60, 170
MfeI CAATTG 2 cut(s) 187, 199
MluCI AATT 2 cut(s) 187, 199
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 2 cut(s) 140, 154
MseI TTAA 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 24
MunI CAATTG 2 cut(s) 187, 199
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 149
NlaIII CATG 4 cut(s) 107, 114, 143, 157
NlaIV GGNNCC 1 cut(s) 28
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 157
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 77
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 24
SfaNI GCATC 2 cut(s) 60, 170
Sse9I AATT 2 cut(s) 187, 199
SspI AATATT 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 22
TaqII GACCGA 1 cut(s) 188
TasI AATT 2 cut(s) 187, 199
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 94
TspDTI ATGAA 2 cut(s) 99, 170
TspRI CASTG 1 cut(s) 94
XagI CCTNNNNNAGG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.