RLG00000032016

X8 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10251910 .. 10253549
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032016

Sequence Viewer

Length: 630 bp
ATGGCGAATGTTCTTGTCCTTCACACTATTGCCGTCGCCTTCCTCGCTCTCTCCAACAACGCCATTGCTGATCTTCCAGGACATGGCCATGCCGCTTTCACGGCAGACATTGCTAAGAATACCTGGTCTGTGGCAAAGCCAACTGCCGGTGATAGTTTGCTACAATTGAACATTGACTTTGCTTGTAGTAAAGTCAACTGTAGTGTAATTGAACCCGGTGGTGAATGCCAATTACCAGACACTAAAATGAACCGCGCGTCTGTTGCCATGAATCTTTACTACCAATCTTTTGGCAGAACAGATCTGAGCTGTTATTTTCAGTTGACCGGCATGGTTGTGATTGAAGATCCAAGTTCTGGAACTTGTGTCTATAAAGGGGTTGTCCTTGTGAGGGATGCTGTCCCTGCAAGTATCAAAATAAAGAAGGGGGAAAGTAAGGCCTTTTCTGCAACATCAATTGGACTTATGGTGGTGTGGTCGATCGCTGGTTGTGGACTGGTGGCAGTGGCTGTATATGTTATGCTTTGGCTTCGTCAGACGAGCACACCAGTGGTGGGAGTTCCTGTGCACACATTGCCAGAGCCATTGTATTTGCGGCCGGAGCCATCAGCTCCCCCGCTTCCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

210

Amino Acids

22.15

Weight (kDa)

6.88

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 42 - 110 1.8e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 83, 356
AccII CGCG 2 cut(s) 255, 257
AciI CCGC 4 cut(s) 93, 253, 595, 617
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 2 cut(s) 85, 596
AfiI CCNNNNNNNGG 5 cut(s) 83, 146, 356, 391, 554
AgsI TTSAA 3 cut(s) 169, 212, 344
AjnI CCWGG 2 cut(s) 76, 122
AleI CACNNNNGTG 1 cut(s) 548
AluBI AGCT 2 cut(s) 309, 611
AluI AGCT 2 cut(s) 309, 611
Alw21I GWGCWC 2 cut(s) 545, 570
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 509
AoxI GGCC 3 cut(s) 85, 438, 596
ApaLI GTGCAC 1 cut(s) 566
AspLEI GCGC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 2 cut(s) 161, 233
BaeGI GKGCMC 1 cut(s) 570
BalI TGGCCA 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 545, 570
BccI CCATC 1 cut(s) 613
BceAI ACGGC 2 cut(s) 17, 117
BciT130I CCWGG 2 cut(s) 78, 124
BcnI CCSGG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 199
BglII AGATCT 1 cut(s) 301
BisI GCNGC 2 cut(s) 93, 596
BlsI GCNGC 2 cut(s) 94, 597
Bme1390I CCNGG 3 cut(s) 78, 124, 216
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 3 cut(s) 78, 124, 216
BmsI GCATC 1 cut(s) 385
BpuMI CCSGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 549, 579
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 146, 356, 391, 554
Bse118I RCCGGY 2 cut(s) 146, 326
Bse1I ACTGG 2 cut(s) 501, 548
Bse3DI GCAATG 3 cut(s) 63, 108, 572
BseBI CCWGG 2 cut(s) 78, 124
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 5 cut(s) 83, 146, 356, 391, 554
BseMI GCAATG 3 cut(s) 63, 108, 572
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 2 cut(s) 501, 548
BseSI GKGCMC 1 cut(s) 570
BseX3I CGGCCG 1 cut(s) 596
Bsh1236I CGCG 2 cut(s) 255, 257
Bsh1285I CGRYCG 2 cut(s) 483, 599
BshFI GGCC 3 cut(s) 87, 440, 598
BsiEI CGRYCG 2 cut(s) 483, 599
BsiHKAI GWGCWC 2 cut(s) 545, 570
BsiSI CCGG 4 cut(s) 147, 216, 327, 599
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 5 cut(s) 83, 146, 356, 391, 554
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 230
BsnI GGCC 3 cut(s) 87, 440, 598
Bsp1286I GDGCHC 2 cut(s) 545, 570
Bsp143I GATC 4 cut(s) 70, 301, 346, 480
BspACI CCGC 4 cut(s) 93, 253, 595, 617
BspANI GGCC 3 cut(s) 87, 440, 598
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 2 cut(s) 255, 257
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 341
BsrDI GCAATG 3 cut(s) 63, 108, 572
BsrFI RCCGGY 2 cut(s) 146, 326
BsrI ACTGG 2 cut(s) 501, 548
BssAI RCCGGY 2 cut(s) 146, 326
BssMI GATC 4 cut(s) 70, 301, 346, 480
Bst2UI CCWGG 2 cut(s) 78, 124
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 110, 574
BstDEI CTNAG 2 cut(s) 114, 305
BstF5I GGATG 1 cut(s) 400
BstFNI CGCG 2 cut(s) 255, 257
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 73, 304, 349, 483
BstMBI GATC 4 cut(s) 70, 301, 346, 480
BstMCI CGRYCG 2 cut(s) 483, 599
BstMWI GCNNNNNNNGC 8 cut(s) 44, 101, 110, 263, 404, 446, 574, 601
BstNI CCWGG 2 cut(s) 78, 124
BstSCI CCNGG 3 cut(s) 76, 122, 214
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 2 cut(s) 255, 257
BstX2I RGATCY 2 cut(s) 301, 346
BstXI CCANNNNNNTGG 1 cut(s) 290
BstYI RGATCY 2 cut(s) 301, 346
BstZI CGGCCG 1 cut(s) 596
BsuRI GGCC 3 cut(s) 87, 440, 598
BtsCI GGATG 1 cut(s) 400
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 510, 555
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 2 cut(s) 146, 326
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 122
CviAII CATG 4 cut(s) 83, 89, 268, 331
DdeI CTNAG 2 cut(s) 114, 305
DpnI GATC 4 cut(s) 72, 303, 348, 482
DpnII GATC 4 cut(s) 70, 301, 346, 480
EaeI YGGCCR 2 cut(s) 85, 596
EagI CGGCCG 1 cut(s) 596
EclXI CGGCCG 1 cut(s) 596
Eco147I AGGCCT 1 cut(s) 440
Eco52I CGGCCG 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 76, 122
FaeI CATG 4 cut(s) 86, 92, 271, 334
FaiI YATR 9 cut(s) 84, 90, 269, 332, 372, 467, 514, 516, 521
FaqI GGGAC 1 cut(s) 386
FatI CATG 4 cut(s) 82, 88, 267, 330
FauI CCCGC 1 cut(s) 624
Fnu4HI GCNGC 2 cut(s) 93, 596
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 93, 596
GlaI GCGC 1 cut(s) 256
GluI GCNGC 2 cut(s) 93, 596
HaeIII GGCC 3 cut(s) 87, 440, 598
HapII CCGG 4 cut(s) 147, 216, 327, 599
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 86, 92, 271, 334
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HincII GTYRAC 2 cut(s) 196, 324
HindII GTYRAC 2 cut(s) 196, 324
HinfI GANTC 1 cut(s) 271
HpaII CCGG 4 cut(s) 147, 216, 327, 599
HphI GGTGA 2 cut(s) 161, 233
Hpy166II GTNNAC 4 cut(s) 196, 324, 494, 568
Hpy188I TCNGA 2 cut(s) 306, 537
Hpy188III TCNNGA 1 cut(s) 357
Hpy8I GTNNAC 4 cut(s) 196, 324, 494, 568
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 29, 49, 418
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 407, 449, 568
HpyF10VI GCNNNNNNNGC 8 cut(s) 44, 101, 110, 263, 404, 446, 574, 601
HpyF3I CTNAG 2 cut(s) 114, 305
Hsp92II CATG 4 cut(s) 86, 92, 271, 334
HspAI GCGC 1 cut(s) 255
Kzo9I GATC 4 cut(s) 70, 301, 346, 480
LmnI GCTCC 2 cut(s) 601, 616
LweI GCATC 1 cut(s) 385
MabI ACCWGGT 1 cut(s) 122
MalI GATC 4 cut(s) 72, 303, 348, 482
MboI GATC 4 cut(s) 70, 301, 346, 480
MboII GAAGA 2 cut(s) 65, 356
MfeI CAATTG 2 cut(s) 164, 456
MflI RGATCY 2 cut(s) 301, 346
MhlI GDGCHC 2 cut(s) 545, 570
MlsI TGGCCA 1 cut(s) 87
MluCI AATT 4 cut(s) 164, 207, 230, 456
MluNI TGGCCA 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 2 cut(s) 53, 384
Mox20I TGGCCA 1 cut(s) 87
MscI TGGCCA 1 cut(s) 87
MslI CAYNNNNRTG 4 cut(s) 87, 245, 335, 548
Msp20I TGGCCA 1 cut(s) 87
MspI CCGG 4 cut(s) 147, 216, 327, 599
MspR9I CCNGG 3 cut(s) 78, 124, 216
MunI CAATTG 2 cut(s) 164, 456
Mva1269I GAATGC 1 cut(s) 230
MvaI CCWGG 2 cut(s) 78, 124
MvnI CGCG 2 cut(s) 255, 257
MwoI GCNNNNNNNGC 8 cut(s) 44, 101, 110, 263, 404, 446, 574, 601
NciI CCSGG 1 cut(s) 216
NdeII GATC 4 cut(s) 70, 301, 346, 480
NlaIII CATG 4 cut(s) 86, 92, 271, 334
NlaIV GGNNCC 1 cut(s) 603
OliI CACNNNNGTG 1 cut(s) 548
PceI AGGCCT 1 cut(s) 440
PctI GAATGC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 2 cut(s) 83, 356
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 2 cut(s) 94, 597
Ple19I CGATCG 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 76, 122
PspGI CCWGG 2 cut(s) 76, 122
PspN4I GGNNCC 1 cut(s) 603
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 2 cut(s) 301, 346
PvuI CGATCG 1 cut(s) 483
RseI CAYNNNNRTG 4 cut(s) 87, 245, 335, 548
SatI GCNGC 2 cut(s) 93, 596
Sau3AI GATC 4 cut(s) 70, 301, 346, 480
ScrFI CCNGG 3 cut(s) 78, 124, 216
SduI GDGCHC 2 cut(s) 545, 570
SetI ASST 3 cut(s) 125, 311, 613
SexAI ACCWGGT 1 cut(s) 122
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 4 cut(s) 87, 245, 335, 548
Sse9I AATT 4 cut(s) 164, 207, 230, 456
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 4 cut(s) 93, 253, 595, 617
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 3 cut(s) 76, 122, 214
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 479
TasI AATT 4 cut(s) 164, 207, 230, 456
TauI GCSGC 2 cut(s) 95, 598
TfiI GAWTC 1 cut(s) 271
TscAI CASTG 2 cut(s) 510, 555
TspDTI ATGAA 2 cut(s) 263, 284
TspRI CASTG 2 cut(s) 510, 555
Van91I CCANNNNNTGG 2 cut(s) 83, 356
VneI GTGCAC 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.