RchiOBHm_Chr5g0013351

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000486
Physical Location & Seq
Forward (+)
9030890 .. 9032700
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29389

Sequence Viewer

Length: 822 bp
ATGAATGCTTACTTCCAACAGGAACATGATTGCACATTTAGTGGCTCTGGACTCAGATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTACTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAACTGCCCCTTACAGTTTACTACAAATGAACATTGACTTCGCTTGTAGTCAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTGATTGACGATCCAAGTTTTGGAACTTGTTTATACAAAAGAAAAGGGAAGGAAGGAGGTGCTGGTGTGAGACTCGTAAAAAAGCACGGGAAATCTAGTGTCATTTTAAAATTGATAGTTGCGTCGATAATTACTTTTGGGTTGGTAGGGACTGTAACTGTTGTGTGCGTGTGCCGGCGTTCTCGGAATCCCTCACAAGCAATAAAAAGTGAGATGCAACACATGCCAACCCCAGCCCCCTCTCAGTCCCAGCCACAGCCATCATGTTCAGTGACAGTATCAGTTCCCTGTGAGGCGGTATCAGTTCCTCTCAGTCACCCTCCCGGTCCTTCTCAAACACAACCCAAGAAAGACGACGGCCAACTTGACATTTTTATTTCAGGTAATCAAGTCAATGGAAACAAAGGAGACCATAATGGACAGTTCTCCGTTGGCAACACTATACACAAGACTGTCCATATCAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

273

Amino Acids

29.31

Weight (kDa)

8.42

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 46 - 116 2.3e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 371
AccI GTMKAC 2 cut(s) 210, 338
AccII CGCG 1 cut(s) 272
AciI CCGC 1 cut(s) 647
AclWI GGATC 2 cut(s) 62, 356
AcoI YGGCCR 1 cut(s) 709
AcsI RAATTY 1 cut(s) 89
AfiI CCNNNNNNNGG 2 cut(s) 77, 371
AflIII ACRYGT 1 cut(s) 270
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 227, 334
AluBI AGCT 3 cut(s) 75, 128, 324
AluI AGCT 3 cut(s) 75, 128, 324
Alw26I GTCTC 2 cut(s) 415, 753
AlwI GGATC 2 cut(s) 62, 356
AoxI GGCC 1 cut(s) 709
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 677
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 248, 659
AvaII GGWCC 1 cut(s) 677
BbvI GCAGC 1 cut(s) 137
BccI CCATC 1 cut(s) 619
BceAI ACGGC 1 cut(s) 724
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 415, 753
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 1 cut(s) 214
BglII AGATCT 1 cut(s) 56
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 675
BmsI GCATC 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 675
BsaI GGTCTC 1 cut(s) 753
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 371
Bse118I RCCGGY 3 cut(s) 230, 341, 525
BseLI CCNNNNNNNGG 2 cut(s) 77, 371
BseMII CTCAG 4 cut(s) 67, 122, 608, 676
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 2 cut(s) 583, 600
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 1 cut(s) 711
BshTI ACCGGT 1 cut(s) 230
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 4 cut(s) 231, 342, 526, 675
BslFI GGGAC 2 cut(s) 514, 583
BslI CCNNNNNNNGG 2 cut(s) 77, 371
BsmAI GTCTC 2 cut(s) 415, 753
BsmFI GGGAC 2 cut(s) 514, 583
BsmI GAATGC 2 cut(s) 10, 245
BsnI GGCC 1 cut(s) 711
Bso31I GGTCTC 1 cut(s) 753
Bsp143I GATC 3 cut(s) 56, 67, 361
BspACI CCGC 1 cut(s) 647
BspANI GGCC 1 cut(s) 711
BspCNI CTCAG 4 cut(s) 66, 123, 607, 675
BspFNI CGCG 1 cut(s) 272
BspPI GGATC 2 cut(s) 62, 356
BspTNI GGTCTC 1 cut(s) 753
BsrFI RCCGGY 3 cut(s) 230, 341, 525
BssAI RCCGGY 3 cut(s) 230, 341, 525
BssMI GATC 3 cut(s) 56, 67, 361
Bst4CI ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
BstAPI GCANNNNNTGC 1 cut(s) 574
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 4 cut(s) 53, 131, 594, 662
BstFNI CGCG 1 cut(s) 272
BstKTI GATC 3 cut(s) 59, 70, 364
BstMAI GTCTC 2 cut(s) 415, 753
BstMBI GATC 3 cut(s) 56, 67, 361
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 125, 278, 574
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 711
BtsIMutI CAGTG 1 cut(s) 627
Cac8I GCNNGC 1 cut(s) 527
Cfr10I RCCGGY 3 cut(s) 230, 341, 525
Cfr13I GGNCC 1 cut(s) 677
CseI GACGC 2 cut(s) 261, 462
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 5 cut(s) 26, 283, 346, 574, 615
CviJI RGCY 9 cut(s) 45, 75, 128, 154, 324, 587, 604, 610, 711
CviKI_1 RGCY 9 cut(s) 45, 75, 128, 154, 324, 587, 604, 610, 711
DdeI CTNAG 4 cut(s) 53, 131, 594, 662
DpnI GATC 3 cut(s) 58, 69, 363
DpnII GATC 3 cut(s) 56, 67, 361
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 677
FaeI CATG 5 cut(s) 29, 286, 349, 577, 618
FaqI GGGAC 2 cut(s) 514, 583
FatI CATG 5 cut(s) 25, 282, 345, 573, 614
FblI GTMKAC 2 cut(s) 210, 338
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 447
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 2 cut(s) 587, 604
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 711
HapII CCGG 4 cut(s) 231, 342, 526, 675
HgaI GACGC 2 cut(s) 261, 462
Hin1II CATG 5 cut(s) 29, 286, 349, 577, 618
HincII GTYRAC 2 cut(s) 211, 339
HindII GTYRAC 2 cut(s) 211, 339
HinfI GANTC 4 cut(s) 51, 286, 423, 538
HpaII CCGG 4 cut(s) 231, 342, 526, 675
HphI GGTGA 2 cut(s) 248, 659
Hpy166II GTNNAC 3 cut(s) 173, 211, 339
Hpy188I TCNGA 4 cut(s) 56, 103, 132, 537
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 3 cut(s) 173, 211, 339
Hpy99I CGWCG 2 cut(s) 478, 710
HpyAV CCTTC 3 cut(s) 394, 398, 690
HpyCH4III ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
HpyCH4V TGCA 4 cut(s) 33, 87, 149, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 278, 574
HpyF3I CTNAG 4 cut(s) 53, 131, 594, 662
Hsp92II CATG 5 cut(s) 29, 286, 349, 577, 618
KroI GCCGGC 1 cut(s) 525
KroNI GCCGGC 1 cut(s) 527
Kzo9I GATC 3 cut(s) 56, 67, 361
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 555
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 3 cut(s) 505, 622, 665
MalI GATC 3 cut(s) 58, 69, 363
MboI GATC 3 cut(s) 56, 67, 361
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 56
MluCI AATT 5 cut(s) 89, 222, 245, 461, 480
MluI ACGCGT 1 cut(s) 270
MlyI GAGTC 2 cut(s) 45, 417
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 6 cut(s) 401, 553, 601, 637, 669, 681
MroNI GCCGGC 1 cut(s) 525
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 2 cut(s) 260, 350
MspI CCGG 4 cut(s) 231, 342, 526, 675
MspR9I CCNGG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 10, 245
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 125, 278, 574
NaeI GCCGGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 675
NdeII GATC 3 cut(s) 56, 67, 361
NgoMIV GCCGGC 1 cut(s) 525
NlaIII CATG 5 cut(s) 29, 286, 349, 577, 618
NmuCI GTSAC 2 cut(s) 622, 665
NspI RCATGY 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 2 cut(s) 10, 245
PdiI GCCGGC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 286, 538
PflMI CCANNNNNTGG 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 230
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 45, 417
PpsI GAGTC 2 cut(s) 45, 417
PspFI CCCAGC 2 cut(s) 583, 600
PspPI GGNCC 1 cut(s) 677
PsuI RGATCY 1 cut(s) 56
RseI CAYNNNNRTG 2 cut(s) 260, 350
SalI GTCGAC 2 cut(s) 209, 337
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 56, 67, 361
Sau96I GGNCC 1 cut(s) 677
SchI GAGTC 2 cut(s) 45, 417
ScrFI CCNGG 1 cut(s) 675
SetI ASST 6 cut(s) 77, 100, 130, 326, 412, 736
SfaNI GCATC 1 cut(s) 555
SfcI CTRYAG 1 cut(s) 214
SinI GGWCC 1 cut(s) 677
SmiMI CAYNNNNRTG 2 cut(s) 260, 350
Sse9I AATT 5 cut(s) 89, 222, 245, 461, 480
SsiI CCGC 1 cut(s) 647
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 673
TaaI ACNGT 7 cut(s) 170, 215, 505, 511, 628, 774, 805
TaqI TCGA 3 cut(s) 210, 338, 476
TasI AATT 5 cut(s) 89, 222, 245, 461, 480
TfiI GAWTC 2 cut(s) 286, 538
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 1 cut(s) 627
TseFI GTSAC 2 cut(s) 622, 665
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 2 cut(s) 622, 665
TspDTI ATGAA 4 cut(s) 17, 197, 278, 299
TspGWI ACGGA 2 cut(s) 93, 769
TspRI CASTG 1 cut(s) 627
Van91I CCANNNNNTGG 1 cut(s) 371
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 577
XmiI GTMKAC 2 cut(s) 210, 338
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.