Rh5CG112000

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000486
Physical Location & Seq
Forward (+)
9179044 .. 9197807
18764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG112000.1

Sequence Viewer

Length: 867 bp
ATGTTGGAGTCTTGCAAGTCCAAGTTGCACGTGGGACATATTCATATTTCACCTTTGAAGGCATTTGCACAGACTTGGTGTGTAGCCAATCCATCATTAGGTTATGATACTTCGGAAAACGTGGAAAGCTATGCATGCAATTACGTGGATTGCTCTTCAATTCACAGCGGAGATCCATGCTCTGTCCCCTCGAACTTGTTTAGTCGTGCATCCTTTGCCATGAATGCTTACTACCAACAGGGACATGATTGCACATTTGGTGGCTCTGGACTCAAATCTATTACTGATCCAAGCTACGGAAACTGCAAATTTGTAGGTTCAGAAGAAATGATTTCTGCTCCAGCAGCTCTGAGTAAATGGTGTATTGCAAAGCCAGCTGCCCCTTACAGTTTACTACAAATAAACATTGACTTCGCTTGTAGTAAAGTCGACTGTAGCGTAATTCAAACCGGTGGTGAATGCCAATTACCAGACACTATAATGAACCACGCGTCTGTTGCCATGAATCTTTACTACCAATCATTTGGCAGAACAGATTTGAGCTGTCATTTCAAGTCGACCGGCATGATTGTGATTGACGATCCAAGTAATCAAGTCAATGGAAACAAAGGAGACCATGATGGACAGTTCTTCGTTGGCAACACTATACACAAGACTACACCGGAAGGATTAGAAGAACTCAGGCTTTCCTTTTTATCTTCTTCTTACATTCAAGAAGAGCTACAATTTTGTGGAGGTGTATGTACTCCAGGTGCTCCAGTCCCACGTCGGATAACCCCTCAGGGTGGATATCCACGACAAAACTCTCTACCAATCCCTCCGACCCGATTGACCGGGCAAGCTCTTCCAGCGCTCGGACGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

288

Amino Acids

31.13

Weight (kDa)

5.96

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 25 - 90 3.2e-12 X8 domain
X8 PF07983 119 - 189 1e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 429, 557
AccII CGCG 1 cut(s) 491
AciI CCGC 1 cut(s) 168
AclWI GGATC 3 cut(s) 167, 281, 575
AcsI RAATTY 1 cut(s) 308
AcvI CACGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 745
AfeI AGCGCT 1 cut(s) 852
AfiI CCNNNNNNNGG 4 cut(s) 98, 296, 785, 854
AflIII ACRYGT 1 cut(s) 489
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 5 cut(s) 58, 159, 446, 553, 713
AjiI CACGTC 1 cut(s) 767
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 7 cut(s) 129, 294, 347, 377, 543, 721, 842
AluI AGCT 7 cut(s) 129, 294, 347, 377, 543, 721, 842
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 1 cut(s) 606
AlwI GGATC 3 cut(s) 167, 281, 575
Aor51HI AGCGCT 1 cut(s) 852
ApeKI GCWGC 2 cut(s) 344, 377
ApoI RAATTY 1 cut(s) 308
AsiGI ACCGGT 1 cut(s) 449
AspLEI GCGC 1 cut(s) 853
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 2 cut(s) 42, 467
AxyI CCTNAGG 1 cut(s) 780
BbrPI CACGTG 1 cut(s) 31
Bbv12I GWGCWC 1 cut(s) 757
BbvI GCAGC 2 cut(s) 356, 364
BccI CCATC 2 cut(s) 100, 614
BciT130I CCWGG 1 cut(s) 750
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 606
BfaI CTAG 1 cut(s) 865
BfmI CTRYAG 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 854
BisI GCNGC 2 cut(s) 345, 378
BlsI GCNGC 2 cut(s) 346, 379
Bme1390I CCNGG 2 cut(s) 750, 835
BmgBI CACGTC 1 cut(s) 767
BmrFI CCNGG 2 cut(s) 750, 835
BmsI GCATC 1 cut(s) 218
BpmI CTGGAG 3 cut(s) 324, 732, 741
BpuMI CCSGG 1 cut(s) 835
BsaAI YACGTR 2 cut(s) 31, 145
BsaI GGTCTC 1 cut(s) 606
BsaWI WCCGGW 2 cut(s) 449, 661
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 296, 785, 854
Bse118I RCCGGY 2 cut(s) 449, 560
Bse1I ACTGG 1 cut(s) 758
Bse21I CCTNAGG 1 cut(s) 780
BseBI CCWGG 1 cut(s) 750
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 4 cut(s) 98, 296, 785, 854
BseMII CTCAG 3 cut(s) 341, 694, 794
BseNI ACTGG 1 cut(s) 758
BseXI GCAGC 2 cut(s) 356, 364
Bsh1236I CGCG 1 cut(s) 491
Bsh1285I CGRYCG 1 cut(s) 561
BshTI ACCGGT 1 cut(s) 449
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 757
BsiSI CCGG 4 cut(s) 450, 561, 662, 834
BslFI GGGAC 4 cut(s) 48, 170, 255, 746
BslI CCNNNNNNNGG 4 cut(s) 98, 296, 785, 854
BsmAI GTCTC 1 cut(s) 606
BsmFI GGGAC 4 cut(s) 48, 170, 255, 746
BsmI GAATGC 2 cut(s) 229, 464
Bso31I GGTCTC 1 cut(s) 606
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 3 cut(s) 172, 286, 580
BspACI CCGC 1 cut(s) 168
BspCNI CTCAG 3 cut(s) 342, 693, 793
BspFNI CGCG 1 cut(s) 491
BspPI GGATC 3 cut(s) 167, 281, 575
BspQI GCTCTTC 3 cut(s) 160, 711, 849
BspTNI GGTCTC 1 cut(s) 606
BsrFI RCCGGY 2 cut(s) 449, 560
BsrI ACTGG 1 cut(s) 758
BssAI RCCGGY 2 cut(s) 449, 560
BssMI GATC 3 cut(s) 172, 286, 580
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 3 cut(s) 389, 434, 627
Bst6I CTCTTC 3 cut(s) 160, 711, 849
BstAPI GCANNNNNTGC 1 cut(s) 215
BstBAI YACGTR 2 cut(s) 31, 145
BstC8I GCNNGC 3 cut(s) 136, 375, 840
BstDEI CTNAG 3 cut(s) 350, 680, 780
BstF5I GGATG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 491
BstH2I RGCGCY 1 cut(s) 854
BstHHI GCGC 1 cut(s) 853
BstKTI GATC 3 cut(s) 175, 289, 583
BstMAI GTCTC 1 cut(s) 606
BstMBI GATC 3 cut(s) 172, 286, 580
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 7 cut(s) 135, 215, 224, 344, 374, 497, 848
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 2 cut(s) 748, 833
BstSFI CTRYAG 1 cut(s) 433
BstUI CGCG 1 cut(s) 491
BstV1I GCAGC 2 cut(s) 356, 364
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 1 cut(s) 172
Bsu36I CCTNAGG 1 cut(s) 780
BtrI CACGTC 1 cut(s) 767
BtsCI GGATG 1 cut(s) 209
Cac8I GCNNGC 3 cut(s) 136, 375, 840
CfoI GCGC 1 cut(s) 853
Cfr10I RCCGGY 2 cut(s) 449, 560
CseI GACGC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 744
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 7 cut(s) 135, 177, 220, 245, 502, 565, 617
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 3 cut(s) 350, 680, 780
DpnI GATC 3 cut(s) 174, 288, 582
DpnII GATC 3 cut(s) 172, 286, 580
Eam1104I CTCTTC 3 cut(s) 160, 711, 849
EarI CTCTTC 3 cut(s) 160, 711, 849
Eco31I GGTCTC 1 cut(s) 606
Eco32I GATATC 1 cut(s) 791
Eco47III AGCGCT 1 cut(s) 852
Eco72I CACGTG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 780
EcoRII CCWGG 1 cut(s) 748
EcoRV GATATC 1 cut(s) 791
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 7 cut(s) 138, 180, 223, 248, 505, 568, 620
FaqI GGGAC 4 cut(s) 48, 170, 255, 746
FatI CATG 7 cut(s) 134, 176, 219, 244, 501, 564, 616
FblI GTMKAC 2 cut(s) 429, 557
Fnu4HI GCNGC 2 cut(s) 345, 378
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 345, 378
FspBI CTAG 1 cut(s) 865
GlaI GCGC 1 cut(s) 852
GluI GCNGC 2 cut(s) 345, 378
GsuI CTGGAG 3 cut(s) 324, 732, 741
HaeII RGCGCY 1 cut(s) 854
HapII CCGG 4 cut(s) 450, 561, 662, 834
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 853
Hin1II CATG 7 cut(s) 138, 180, 223, 248, 505, 568, 620
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HincII GTYRAC 2 cut(s) 430, 558
HindII GTYRAC 2 cut(s) 430, 558
HinfI GANTC 4 cut(s) 8, 270, 505, 861
HpaII CCGG 4 cut(s) 450, 561, 662, 834
HphI GGTGA 2 cut(s) 42, 467
Hpy166II GTNNAC 3 cut(s) 392, 430, 558
Hpy188I TCNGA 6 cut(s) 115, 322, 351, 771, 822, 857
Hpy188III TCNNGA 2 cut(s) 267, 713
Hpy8I GTNNAC 3 cut(s) 392, 430, 558
Hpy99I CGWCG 1 cut(s) 771
HpyAV CCTTC 2 cut(s) 52, 659
HpyCH4III ACNGT 3 cut(s) 389, 434, 627
HpyCH4IV ACGT 4 cut(s) 30, 120, 144, 766
HpyCH4V TGCA 9 cut(s) 15, 28, 68, 134, 138, 209, 252, 306, 368
HpyF10VI GCNNNNNNNGC 7 cut(s) 135, 215, 224, 344, 374, 497, 848
HpyF3I CTNAG 3 cut(s) 350, 680, 780
HpySE526I ACGT 4 cut(s) 30, 120, 144, 766
Hsp92II CATG 7 cut(s) 138, 180, 223, 248, 505, 568, 620
HspAI GCGC 1 cut(s) 851
Kzo9I GATC 3 cut(s) 172, 286, 580
LguI GCTCTTC 3 cut(s) 160, 711, 849
LmnI GCTCC 2 cut(s) 343, 760
Lsp1109I GCAGC 2 cut(s) 356, 364
LweI GCATC 1 cut(s) 218
MaeI CTAG 1 cut(s) 865
MaeII ACGT 4 cut(s) 30, 120, 144, 766
MalI GATC 3 cut(s) 174, 288, 582
MboI GATC 3 cut(s) 172, 286, 580
MboII GAAGA 8 cut(s) 147, 335, 622, 686, 690, 693, 728, 836
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 6 cut(s) 139, 159, 308, 441, 464, 725
MluI ACGCGT 1 cut(s) 489
MlyI GAGTC 2 cut(s) 17, 264
MmeI TCCRAC 2 cut(s) 749, 845
MnlI CCTC 4 cut(s) 199, 728, 789, 828
Mph1103I ATGCAT 1 cut(s) 136
MslI CAYNNNNRTG 2 cut(s) 479, 569
MspA1I CMGCKG 2 cut(s) 168, 377
MspI CCGG 4 cut(s) 450, 561, 662, 834
MspR9I CCNGG 2 cut(s) 750, 835
Mva1269I GAATGC 2 cut(s) 229, 464
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 1 cut(s) 491
MwoI GCNNNNNNNGC 7 cut(s) 135, 215, 224, 344, 374, 497, 848
NciI CCSGG 1 cut(s) 835
NdeII GATC 3 cut(s) 172, 286, 580
NlaIII CATG 7 cut(s) 138, 180, 223, 248, 505, 568, 620
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 138
PaeI GCATGC 1 cut(s) 138
PciSI GCTCTTC 3 cut(s) 160, 711, 849
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 2 cut(s) 229, 464
PfeI GAWTC 2 cut(s) 505, 861
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 2 cut(s) 346, 379
PleI GAGTC 2 cut(s) 16, 264
PmaCI CACGTG 1 cut(s) 31
PmlI CACGTG 1 cut(s) 31
PpsI GAGTC 2 cut(s) 16, 264
Ppu21I YACGTR 2 cut(s) 31, 145
Psp6I CCWGG 1 cut(s) 748
PspCI CACGTG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 748
PsuI RGATCY 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
RseI CAYNNNNRTG 2 cut(s) 479, 569
SalI GTCGAC 2 cut(s) 428, 556
SapI GCTCTTC 3 cut(s) 160, 711, 849
SatI GCNGC 2 cut(s) 345, 378
Sau3AI GATC 3 cut(s) 172, 286, 580
SchI GAGTC 2 cut(s) 17, 264
ScrFI CCNGG 2 cut(s) 750, 835
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 479, 569
SphI GCATGC 1 cut(s) 138
Sse9I AATT 6 cut(s) 139, 159, 308, 441, 464, 725
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 865
StyD4I CCNGG 2 cut(s) 748, 833
TaaI ACNGT 3 cut(s) 389, 434, 627
TaiI ACGT 4 cut(s) 33, 123, 147, 769
TaqI TCGA 3 cut(s) 191, 429, 557
TasI AATT 6 cut(s) 139, 159, 308, 441, 464, 725
TatI WGTACW 1 cut(s) 743
TfiI GAWTC 2 cut(s) 505, 861
TseI GCWGC 2 cut(s) 344, 377
TspDTI ATGAA 4 cut(s) 32, 236, 497, 518
TspGWI ACGGA 1 cut(s) 312
XapI RAATTY 1 cut(s) 308
XceI RCATGY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XmiI GTMKAC 2 cut(s) 429, 557
XspI CTAG 1 cut(s) 865
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.