RLG00000032015

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000486
Physical Location & Seq
Forward (+)
10248305 .. 10250341
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032015

Sequence Viewer

Length: 900 bp
ATGGTGTTCATCATCGCCCTCCAATTCTATGCTGCAATGGCCAAGTTGATTACCCTTTGCACTCTTGCAGCCTTGTTGCTCTCTCTCCTTCATGCTCATGCTGCTTCTCTAGGAGATAGTCATACTCTGTCCACGGCAGAGACTGCAGAGACTTGGTGTGTCCCCAATCCATCGTTGACCTATAAGAATCTGCAAGAGATAGAAACCTTTGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTTGAACGCCTTTATTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGTCATTTTGCAGGTAGAGAAGAGAAGGTTTCCTCTTCAGCAGCTCTGAATACATGGTGTGTGGCAAAGCCGACTGCCACTGACAATTTGCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTCATTGAACCCGGTGGTGAATGCCAATTACAAGACACTATGATGAACCATGCATCTGTAGCCATGAATCTCTTCTACCAATCTTCTGGCAGAACAGATTCGAGTTGTTATTTCAACTCGACTGGCATGAATGTGATTAAAGATCCAAGTTCTGGAAATTGTGTCTATAACGTTGCTGTCCCTGCGAGTCTCAGAACAAAGAAGAGGAAATCTAAAGCTTCTGCAACATTTATTGGACTGATGGTGCTGTGTTTGATCATTGGTTGTGTGCTGCTGGCAGGGGTTGTGTATCTTATCCTCAAGCTTCGTCAGACACCCACAAGAGCAGCAGCGGTGGAAACTTCCATGTACAGATTGCAGGAGCCAACAGCTGCCACTCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

300

Amino Acids

32.27

Weight (kDa)

6.48

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 51 - 109 1.7e-13 X8 domain
X8 PF07983 144 - 214 1.8e-17 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 380
AccB7I CCANNNNNTGG 2 cut(s) 371, 665
AciI CCGC 1 cut(s) 845
AclI AACGTT 1 cut(s) 684
AclWI GGATC 2 cut(s) 356, 650
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 2 cut(s) 371, 665
AgsI TTSAA 6 cut(s) 237, 262, 271, 478, 521, 628
AluBI AGCT 5 cut(s) 369, 422, 731, 817, 884
AluI AGCT 5 cut(s) 369, 422, 731, 817, 884
Alw26I GTCTC 3 cut(s) 134, 143, 707
AlwI GGATC 2 cut(s) 356, 650
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 9 cut(s) 32, 68, 101, 287, 419, 784, 839, 842, 884
Asp700I GAANNNNTTC 2 cut(s) 584, 610
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 1 cut(s) 542
AvaII GGWCC 1 cut(s) 251
BalI TGGCCA 1 cut(s) 41
BbvI GCAGC 9 cut(s) 19, 80, 88, 299, 431, 771, 851, 854, 871
BccI CCATC 2 cut(s) 178, 748
BceAI ACGGC 1 cut(s) 150
BclI TGATCA 1 cut(s) 768
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 3 cut(s) 134, 143, 707
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 3 cut(s) 144, 508, 570
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 9 cut(s) 33, 69, 102, 288, 420, 785, 840, 843, 885
BlsI GCNGC 9 cut(s) 34, 70, 103, 289, 421, 786, 841, 844, 886
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 252, 876
BmrFI CCNGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 1 cut(s) 525
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 665
Bse1I ACTGG 2 cut(s) 325, 640
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 371, 665
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 718
BseNI ACTGG 2 cut(s) 325, 640
BseXI GCAGC 9 cut(s) 19, 80, 88, 299, 431, 771, 851, 854, 871
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 146, 677
BslI CCNNNNNNNGG 2 cut(s) 371, 665
BsmAI GTCTC 3 cut(s) 134, 143, 707
BsmFI GGGAC 2 cut(s) 146, 677
BsmI GAATGC 2 cut(s) 307, 539
BsnI GGCC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 3 cut(s) 361, 655, 768
BspACI CCGC 1 cut(s) 845
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 252, 876
BspMAI CTGCAG 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 2 cut(s) 356, 650
BspQI GCTCTTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 42
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 2 cut(s) 325, 640
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 361, 655, 768
Bst4CI ACNGT 3 cut(s) 245, 380, 509
Bst6I CTCTTC 6 cut(s) 238, 393, 418, 590, 710, 897
BstAPI GCANNNNNTGC 2 cut(s) 143, 293
BstAUI TGTACA 1 cut(s) 861
BstC8I GCNNGC 2 cut(s) 214, 789
BstDEI CTNAG 2 cut(s) 704, 897
BstDSI CCRYGG 1 cut(s) 132
BstKTI GATC 3 cut(s) 364, 658, 771
BstMAI GTCTC 3 cut(s) 134, 143, 707
BstMBI GATC 3 cut(s) 361, 655, 768
BstMWI GCNNNNNNNGC 7 cut(s) 38, 101, 143, 293, 302, 572, 695
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 3 cut(s) 144, 508, 570
BstV1I GCAGC 9 cut(s) 19, 80, 88, 299, 431, 771, 851, 854, 871
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 2 cut(s) 332, 599
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 250, 332, 456
BveI ACCTGC 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 214, 789
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 862
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 2 cut(s) 704, 897
DpnI GATC 3 cut(s) 363, 657, 770
DpnII GATC 3 cut(s) 361, 655, 768
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 6 cut(s) 238, 393, 418, 590, 710, 897
EarI CTCTTC 6 cut(s) 238, 393, 418, 590, 710, 897
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 568
FaqI GGGAC 2 cut(s) 146, 677
FbaI TGATCA 1 cut(s) 768
Fnu4HI GCNGC 9 cut(s) 33, 69, 102, 288, 420, 785, 840, 843, 885
Fsp4HI GCNGC 9 cut(s) 33, 69, 102, 288, 420, 785, 840, 843, 885
FspBI CTAG 1 cut(s) 110
GluI GCNGC 9 cut(s) 33, 69, 102, 288, 420, 785, 840, 843, 885
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 525
HincII GTYRAC 2 cut(s) 177, 505
HindII GTYRAC 2 cut(s) 177, 505
HindIII AAGCTT 2 cut(s) 729, 815
HinfI GANTC 5 cut(s) 187, 345, 580, 611, 700
HpaII CCGG 1 cut(s) 525
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 3 cut(s) 132, 177, 505
Hpy188I TCNGA 3 cut(s) 426, 707, 825
Hpy188III TCNNGA 3 cut(s) 314, 342, 666
Hpy8I GTNNAC 3 cut(s) 132, 177, 505
HpyAV CCTTC 2 cut(s) 98, 397
HpyCH4III ACNGT 3 cut(s) 245, 380, 509
HpyCH4IV ACGT 1 cut(s) 684
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 101, 143, 293, 302, 572, 695
HpyF3I CTNAG 2 cut(s) 704, 897
HpySE526I ACGT 1 cut(s) 684
Ksp22I TGATCA 1 cut(s) 768
Kzo9I GATC 3 cut(s) 361, 655, 768
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 316, 874
Lsp1109I GCAGC 9 cut(s) 19, 80, 88, 299, 431, 771, 851, 854, 871
LweI GCATC 1 cut(s) 575
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 363, 657, 770
MboI GATC 3 cut(s) 361, 655, 768
MboII GAAGA 7 cut(s) 225, 405, 410, 577, 588, 727, 884
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 7 cut(s) 23, 217, 237, 463, 473, 539, 670
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 339, 709
MnlI CCTC 4 cut(s) 29, 421, 711, 821
Mox20I TGGCCA 1 cut(s) 41
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 2 cut(s) 584, 610
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 3 cut(s) 96, 554, 644
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 845, 884
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 1 cut(s) 473
Mva1269I GAATGC 2 cut(s) 307, 539
MwoI GCNNNNNNNGC 7 cut(s) 38, 101, 143, 293, 302, 572, 695
NciI CCSGG 1 cut(s) 525
NdeII GATC 3 cut(s) 361, 655, 768
NlaIV GGNNCC 2 cut(s) 252, 876
NsiI ATGCAT 1 cut(s) 568
PciSI GCTCTTC 1 cut(s) 238
PctI GAATGC 2 cut(s) 307, 539
PdmI GAANNNNTTC 2 cut(s) 584, 610
PfeI GAWTC 3 cut(s) 187, 580, 611
PflMI CCANNNNNTGG 2 cut(s) 371, 665
PkrI GCNGC 9 cut(s) 34, 70, 103, 289, 421, 786, 841, 844, 886
PleI GAGTC 2 cut(s) 339, 708
PpsI GAGTC 2 cut(s) 339, 708
Psp1406I AACGTT 1 cut(s) 684
PspN4I GGNNCC 2 cut(s) 252, 876
PspPI GGNCC 1 cut(s) 251
PstI CTGCAG 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
RseI CAYNNNNRTG 3 cut(s) 96, 554, 644
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 9 cut(s) 33, 69, 102, 288, 420, 785, 840, 843, 885
Sau3AI GATC 3 cut(s) 361, 655, 768
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 339, 709
ScrFI CCNGG 1 cut(s) 525
SfaNI GCATC 1 cut(s) 575
SfcI CTRYAG 3 cut(s) 144, 508, 570
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 3 cut(s) 96, 554, 644
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 7 cut(s) 23, 217, 237, 463, 473, 539, 670
SsiI CCGC 1 cut(s) 845
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 523
TaaI ACNGT 3 cut(s) 245, 380, 509
TaiI ACGT 1 cut(s) 687
TaqI TCGA 2 cut(s) 614, 632
TasI AATT 7 cut(s) 23, 217, 237, 463, 473, 539, 670
TatI WGTACW 1 cut(s) 861
TfiI GAWTC 3 cut(s) 187, 580, 611
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 250, 332, 463
TseI GCWGC 9 cut(s) 32, 68, 101, 287, 419, 784, 839, 842, 884
TspDTI ATGAA 6 cut(s) 80, 272, 314, 572, 593, 656
TspRI CASTG 3 cut(s) 250, 332, 463
Van91I CCANNNNNTGG 2 cut(s) 371, 665
VpaK11BI GGWCC 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 584, 610
XspI CTAG 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.