Rmu_sc0010713.1_g000001

Major pollen allergen Ole e 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010713.1
OG0000486
Physical Location & Seq
Forward (+)
1 .. 417
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010713.1_g000001.1.cds

Sequence Viewer

Length: 287 bp
gagggcctataaagcttgttagtggggatgagaataagaccttgtgtgctgctaagccttcagcaactgattcagagctctctgcaaacattcagtttgcctgcaaccaattgaaggattgcagggtgattcaagaaggaggctcatgctataaccccaactcactcattaaccatgcctcagtggtgatgaatcttttctataaggcggtaggccaaaacagctggaattgtgacttcagaggatctgctctcatcactcagactgatccaagttatgcatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

94

Amino Acids

10.19

Weight (kDa)

5.63

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29735 AT4G09090 AT4G09462 AT4G09464 AT4G09465 AT4G09466 AT4G09467 AT5G53600 AT5G53610 AT5G63225 AT5G63230
fragaria_vesca FvH4_3g06020 FvH4_3g06020 FvH4_3g06020 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06030 FvH4_3g06040 FvH4_4g08590 FvH4_6g37860
malus_domestica MD10G1265100.v1.1
prunus_persica Prupe.4G076700_v2.0.a1 Prupe.4G076900_v2.0.a1 Prupe.4G084600_v2.0.a1 Prupe.4G130100_v2.0.a1 Prupe.6G294200_v2.0.a1
pyrus_communis pycom05g26640 pycom10g22110
rosa_chinensis RchiOBHm_Chr5g0013281 RchiOBHm_Chr5g0013291 RchiOBHm_Chr5g0013321 RchiOBHm_Chr5g0013341 RchiOBHm_Chr5g0013351 RchiOBHm_Chr5g0013361 RchiOBHm_Chr5g0013371 RchiOBHm_Chr5g0013381 RchiOBHm_Chr5g0013391
rosa_laevigata RLG00000032004 RLG00000032005 RLG00000032008 RLG00000032012 RLG00000032013 RLG00000032014 RLG00000032015 RLG00000032016
rosa_multiflora Rmu_co8200260.1_g000001 Rmu_co8451143.1_g000001 Rmu_sc0003458.1_g000006 Rmu_sc0003458.1_g000008 Rmu_sc0003458.1_g000009 Rmu_sc0003458.1_g000012 Rmu_sc0003458.1_g000014 Rmu_sc0010713.1_g000001
rosa_roxburghii Rroxscaffold_1G00063160 Rroxscaffold_1G00063170 Rroxscaffold_1G00063180 Rroxscaffold_1G00063190 Rroxscaffold_1G00063200 Rroxscaffold_1G00063210
rosa_rugosa Rorug05G0008700 Rorug05G0008700 Rorug05G0008800 Rorug05G0008800 Rorug05G0008900.1 Rorug05G0009000 Rorug05G0009000 Rorug05G0009000
rosa_samantha Rh5AG103700 Rh5AG103800 Rh5AG104000 Rh5AG104300 Rh5AG104400 Rh5BG100300 Rh5BG100400 Rh5BG100500 Rh5BG100600 Rh5BG100700 Rh5CG111500 Rh5CG111600 Rh5CG112000 Rh5CG112200 Rh5CG112300 Rh5CG112500 Rh5DG099200 Rh5DG099300
rosa_wichuraiana Rw5G009040 Rw5G009050 Rw5G009080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 208
AclWI GGATC 2 cut(s) 252, 262
AcuI CTGAAG 2 cut(s) 44, 222
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 2 cut(s) 114, 133
AluBI AGCT 3 cut(s) 15, 78, 224
AluI AGCT 3 cut(s) 15, 78, 224
Alw21I GWGCWC 1 cut(s) 80
AlwI GGATC 2 cut(s) 252, 262
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 2 cut(s) 4, 213
ApeKI GCWGC 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 138, 198
BanII GRGCYC 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 50
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 194, 274
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 2 cut(s) 6, 215
BsiHKAI GWGCWC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 114
BsnI GGCC 2 cut(s) 6, 215
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 2 cut(s) 244, 267
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 1 cut(s) 208
BspANI GGCC 2 cut(s) 6, 215
BspCNI CTCAG 2 cut(s) 193, 273
BspPI GGATC 2 cut(s) 252, 262
BssMI GATC 2 cut(s) 244, 267
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 3 cut(s) 53, 180, 260
BstF5I GGATG 1 cut(s) 33
BstKTI GATC 2 cut(s) 247, 270
BstMBI GATC 2 cut(s) 244, 267
BstMWI GCNNNNNNNGC 2 cut(s) 12, 221
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuRI GGCC 2 cut(s) 6, 215
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 3 cut(s) 146, 175, 281
CviJI RGCY 7 cut(s) 6, 15, 57, 78, 143, 215, 224
CviKI_1 RGCY 7 cut(s) 6, 15, 57, 78, 143, 215, 224
DdeI CTNAG 3 cut(s) 53, 180, 260
DpnI GATC 2 cut(s) 246, 269
DpnII GATC 2 cut(s) 244, 267
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 44, 222
EcoICRI GAGCTC 1 cut(s) 78
EcoO109I RGGNCCY 1 cut(s) 4
EcoT22I ATGCAT 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 3 cut(s) 149, 178, 284
FaiI YATR 7 cut(s) 10, 147, 152, 176, 203, 278, 282
FatI CATG 3 cut(s) 145, 174, 280
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 2 cut(s) 6, 215
Hin1II CATG 3 cut(s) 149, 178, 284
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 70, 129, 192
HphI GGTGA 2 cut(s) 138, 198
Hpy188I TCNGA 3 cut(s) 75, 241, 263
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 68, 108, 130
HpyCH4V TGCA 4 cut(s) 85, 104, 122, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 221
HpyF3I CTNAG 3 cut(s) 53, 180, 260
Hsp92II CATG 3 cut(s) 149, 178, 284
Kzo9I GATC 2 cut(s) 244, 267
LpnPI CCDG 3 cut(s) 108, 114, 210
Lsp1109I GCAGC 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 246, 269
MboI GATC 2 cut(s) 244, 267
MfeI CAATTG 1 cut(s) 109
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 2 cut(s) 109, 228
MnlI CCTC 3 cut(s) 133, 189, 235
Mph1103I ATGCAT 1 cut(s) 282
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 224
MunI CAATTG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 12, 221
NdeII GATC 2 cut(s) 244, 267
NlaIII CATG 3 cut(s) 149, 178, 284
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 70, 129, 192
PkrI GCNGC 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 2 cut(s) 244, 267
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 80
SetI ASST 4 cut(s) 17, 43, 80, 226
SgeI CNNG 8 cut(s) 28, 54, 113, 135, 145, 158, 187, 237
Sse9I AATT 2 cut(s) 109, 228
SsiI CCGC 1 cut(s) 208
SstI GAGCTC 1 cut(s) 80
TasI AATT 2 cut(s) 109, 228
TfiI GAWTC 3 cut(s) 70, 129, 192
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TscAI CASTG 1 cut(s) 188
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.